Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H23
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 70 3e-12
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 62 4e-10
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 58 7e-09
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081... 49 4e-06
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 36 0.042
06_01_0800 - 5988425-5988580,5988842-5988951,5990275-5990392,599... 31 0.90
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 29 3.6
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 28 8.4
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 69.7 bits (163), Expect = 3e-12
Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 9/223 (4%)
Frame = +1
Query: 199 WPGCSVKPFXXXXXXXXXXXXDVDCYAQLPEG-EIPSSRTVIQARNRLRQFPHIFTELFA 375
WP + + DVD Q+ E + ++ LR+ F + A
Sbjct: 210 WPNAQLHLYGSCANSFGNSHSDVDVCLQIDTAAEENIAELLLALAETLRKDD--FDNVEA 267
Query: 376 ITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSKIK 555
IT+A+VP++K +G CDI +L + N+KL+ +D R ++LA I+K+W+K++
Sbjct: 268 ITSARVPIVKIADPGSGLSCDICVNNLFAVANTKLLKDYAQIDERLLQLAFIVKHWAKLR 327
Query: 556 KITGT--NLMPNYGLTLLVIFYLQQ--ICMLPSVKDLQSDVECLMTDYWNTNFNN-NYL- 717
+ T + +Y L+ I +LQQ +LP ++ ++ ++ F+ + L
Sbjct: 328 GVNETYRGTLSSYAYVLMCISFLQQREPKILPCLQAMEPTYTVVVDGTECAYFDQVDQLK 387
Query: 718 -HRTTNNESLYKLLGGFFSYYG-TFDFXXNIICPYLGFPIXKK 840
N ES+ +LL FF Y+ D+ ++I +G I K+
Sbjct: 388 DFGAENKESIAELLWAFFHYWAFHHDYRNDVISVRMGNTISKQ 430
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 62.5 bits (145), Expect = 4e-10
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Frame = +1
Query: 205 GCSVKPFXXXXXXXXXXXXDVDCYAQLPEGEIPSSRT---VIQARNRLRQFPHIFTELFA 375
G KPF D+D LP I S + V++ R+ Q + +
Sbjct: 8 GAVFKPFGSFVSNLYSNSGDLDISVHLPNNSIISKKKKQYVLRELMRVLQNRGVAGYVQF 67
Query: 376 ITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSKIK 555
+ A+VPVL+ G CDI+ + G SK+ ++ LD R + ++IK W+K +
Sbjct: 68 VPFARVPVLQYVSNTFGISCDISVNNYPGRIKSKIFCWISSLDVRFGDMVLLIKEWAKAQ 127
Query: 556 KITG--TNLMPNYGLTLLVIFYLQ--QICMLPSVKDL-QSDVECLMTDYWNTNFNNNYLH 720
I T + +Y L LLV+F+ Q + +LP +K++ + ++E + Y N + +
Sbjct: 128 NINDPKTGTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIEEGIAAYLYLNSLHLHTE 187
Query: 721 RTTNNE 738
T +E
Sbjct: 188 MTVYDE 193
>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 58.4 bits (135), Expect = 7e-09
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Frame = +1
Query: 355 IFTELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVII 534
IF + + TA+VP++ TG CDI + G+ S + ++ LDPR L+ ++
Sbjct: 787 IFCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQILSYLV 846
Query: 535 KYWSKIKKITG--TNLMPNYGLTLLVIFYLQQI 627
K+W+KI + + + + LV F+LQQ+
Sbjct: 847 KFWAKIHDVNSPRERTLSSMSIVSLVAFHLQQL 879
>08_02_1582 +
28007169-28007188,28007278-28007312,28007945-28008130,
28008783-28008962,28009290-28009474,28009593-28009688,
28009888-28009933,28010054-28010160,28010893-28010994,
28011080-28011614,28012296-28012366,28012747-28012830
Length = 548
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 376 ITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSKIK 555
+ TAKVPVLK TG CDI+ + G+ S + + +D R L ++K+W+K
Sbjct: 151 VVTAKVPVLKVIDKGTGVECDISVENKDGMSRSMIFKLISSIDERFQILCYLMKFWAKAH 210
Query: 556 KIT--GTNLMPNYGLTLLVIFYLQ 621
+ M + + LV F+LQ
Sbjct: 211 DVNCPRDRTMSSMAIISLVAFHLQ 234
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 35.9 bits (79), Expect = 0.042
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = +1
Query: 205 GCSVKPFXXXXXXXXXXXXDVDCYAQLPEG-EIPSSRT----VIQARNRLRQFPHIFTEL 369
G SVKPF D+D +L +P S+ ++ R Q I +
Sbjct: 52 GASVKPFGSFVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHM 111
Query: 370 FAITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPR 510
I A+VPVL+ G CDI+ ++ G SK+ ++ LD R
Sbjct: 112 EFIPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDR 158
>06_01_0800 -
5988425-5988580,5988842-5988951,5990275-5990392,
5990649-5990723,5990856-5991030,5991160-5991425
Length = 299
Score = 31.5 bits (68), Expect = 0.90
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -1
Query: 489 ISN*FTIINTGQTRKIDITVVTSWYVVTFQYWHF 388
+ N +TI N+G T K +++++ +++F+ WHF
Sbjct: 173 VQNRYTIYNSGNTSKAEVSIL---QIISFKNWHF 203
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 267 RLLCPTPRGRDTIKQDSHTGTQQTETIPTYFH*IICYNHSKSASTEMLPHTNWLP 431
R+ P PRG+ + D T+ ++I + +C A+ E L NWLP
Sbjct: 97 RVAAPVPRGKGDAEFDEEAWTKDNKSISGFIAYALC------AADEALRDANWLP 145
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 424 GYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSKIKKITGTNLMPNYG 591
G H ++ L GI + L+A++LHL+ + L ++ SK+ + L ++G
Sbjct: 75 GAHVNLGAFYLVGIPTAVLLAFVLHLNGEGLWLGIVCGSISKVGMLLFITLHTDWG 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,852,995
Number of Sequences: 37544
Number of extensions: 377461
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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