Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H21
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 35 0.098
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 31 0.91
12_02_0589 + 20850249-20850491,20850583-20851839 31 1.2
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 31 1.2
04_04_0248 - 23891684-23892064 31 1.2
09_06_0280 + 22010270-22011407,22011890-22013097 31 1.6
03_05_1129 - 30595580-30595771,30596119-30597162 31 1.6
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 3.7
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 4.9
02_02_0103 + 6797830-6798433,6799412-6799480,6799573-6799664,679... 29 4.9
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 29 4.9
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 6.4
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 6.4
04_01_0615 - 8060085-8060972 29 6.4
07_03_1107 - 24024387-24024497,24025799-24026410 28 8.5
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 34.7 bits (76), Expect = 0.098
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 450 TESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVV---TLIPKIAVNTTSVSRA 620
T P + R K QT +A +PP+R A + + T +P + N +SVS
Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320
Query: 621 LPASTVAPSEPFSRS 665
P STVA +P + S
Sbjct: 321 RPPSTVAAPKPATSS 335
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 31.5 bits (68), Expect = 0.91
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 34 TLVPGLSSQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 171
TL+ L+S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 314 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 177
A SSL T S S R ++ +WR+ R+ +R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = -1
Query: 457 LSVVGKSGAALIAGGFSVPAVPEDVALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKV 278
+ V+ S A I + PA+ L ++ D+V ++ +GSG GL + L+ V
Sbjct: 200 IMVMTCSFAYYIVPSYLFPAISTISVLCWLYRDSVTAQQIGSGASGLGVGSF-GLDWNTV 258
Query: 277 VAVLGQVFGICGVESETVTAGFQFGYTVVALPVFVTGD 164
V LG V AGF T VA+P+ D
Sbjct: 259 VGFLGNPLASPAFAIFNVMAGFALS-TYVAVPILYWTD 295
>04_04_0248 - 23891684-23892064
Length = 126
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +3
Query: 414 PPAISAAPDLPTTESPAS----ACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVTLI 581
P ++AA P + A A RFRSA + AA R A + + L+
Sbjct: 17 PAVVAAARMRPAAATGARMQSVAAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAMPLL 76
Query: 582 PKIAVNTTSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFP 713
P A T+ PA+ AP P + + P TA + P
Sbjct: 77 PSAA---TAARMWPPAAKAAPMHPAAATAAPLQSATASVVRMCP 117
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +2
Query: 500 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYICLEGVAREYGCPIGTVFKIG 667
N + AN + CP PGE + S +++ ++ R Y+C + G + G
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVCRCDDGYD-----GNPYVAG 329
Query: 668 DADGTGNCEDPEDVPGC 718
CE P++ GC
Sbjct: 330 GCQDINECERPKE-HGC 345
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +3
Query: 456 SPASACGLIRFRSAKTKK*QTDSA-ARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPAS 632
SP+ A L R + T + + A A PP S AR VVTL P+ + A S
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPS 234
Query: 633 TVAPSEPFS---RSETPTA 680
VA S S R TP A
Sbjct: 235 PVALSAAVSTHLRVSTPDA 253
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 534 PPVRSPTLARSVVTLIPKIAVNTTSVS----RALPASTVAPSEPFSRSETPTALVTAKTP 701
P + T +R+V+ P + +TS S + LP+ T+ +P R E+ T KTP
Sbjct: 250 PRQTTSTESRTVLVPPPSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTP 309
Query: 702 KT 707
T
Sbjct: 310 ST 311
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 293 ECGERTQLEPPISTPHCSRLYGIF 364
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>02_02_0103 +
6797830-6798433,6799412-6799480,6799573-6799664,
6799968-6800002,6800306-6800470,6800561-6800657,
6800915-6801031
Length = 392
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 749 PSDPRHHSNPHIRERLRGLRS 687
PS P H +PH R RLRG R+
Sbjct: 38 PSSPTPHPHPHRRLRLRGARA 58
>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
Length = 250
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 335 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 240
+WR R LR+QRC EG RS + +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 299 RTQRCEGSRSSRSSIWNLWRRKRDR 225
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 398 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 577
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 578 HPE 586
E
Sbjct: 129 DYE 131
>04_01_0615 - 8060085-8060972
Length = 295
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +3
Query: 417 PAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVTLIPKIAV 596
P +A P LP++ A+ + S+ +P V +P+ S + +
Sbjct: 70 PLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLP 129
Query: 597 NTTSVSRALPASTVAPSEP 653
T+V ALP + PS+P
Sbjct: 130 CLTTVGPALPGAPSTPSQP 148
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 492 SAKTKK*QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFSRS-- 665
SA +K AA P P A S T P A TT+ A AP+ P + +
Sbjct: 18 SASAQKATPTPAAAPATTPP--ASSKKTPAPAAAPTTTTPPAASTPPAAAPTTPATPAPA 75
Query: 666 ETPTALVTAKTPKT 707
E PT K P T
Sbjct: 76 EAPTTPAPTKAPPT 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,987,279
Number of Sequences: 37544
Number of extensions: 557705
Number of successful extensions: 1994
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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