Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H20
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 45 1e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.75
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.99
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 28 1.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.3
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 2.3
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 27 3.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 5.3
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 7.0
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 7.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.2
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 9.2
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 45.2 bits (102), Expect = 1e-05
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Frame = +2
Query: 494 VFVPLNFRLSIFGFIC----LGVPDAPGNAGLKDILQGLTWLKRNIAGFGGDPNNIVL-- 655
+ V RL++FGF+ L N G D GL W ++I FGG+ NI +
Sbjct: 136 ILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGG 195
Query: 656 IGHGSGAALVDLL--TMSPRSKNLVHKAIALS-GSALSPWAV 772
I GS +AL L+ T P + ++ +A+ LS G ++ P +V
Sbjct: 196 ISAGSYSALFQLIYETYHPEANQIIKRALLLSNGLSVQPKSV 237
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.75
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 435 NTPPPPHQCSATKKSSK---RT*FSC-L*TSVYQSSVSFASVFPTHQATLVSKTSSKVSP 602
+TPPPP S+T SS T SC TS+ + S V PT T S TS+ P
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.99
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 436 LFSVEPNENRFGCGRIFRVYAECQ 365
L + EP + FGCG +F + ECQ
Sbjct: 165 LATTEPYSSDFGCGSLFYMSPECQ 188
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 116 VSFTAAQDSLQVNTTEGTVEGSRAADGDYLTFYDIPYA 229
VSF S T G + SR D + + FYD+ A
Sbjct: 106 VSFNRLPKSASTKTKNGRIRSSRREDDNRIPFYDLDVA 143
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 369 HSAYTRKIRPHPNRFSFGSTLNNTPPPP 452
H+ + PHP FS S + T PPP
Sbjct: 346 HTQNSSAQSPHPRVFSANSAFSTTSPPP 373
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 137 DSLQVNTTEGTVEGSRAADGDYLT 208
D+ QVN G V SRA D DY T
Sbjct: 79 DTKQVNGAGGQVNHSRAEDSDYAT 102
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 652 AYWSWFGRSASRSVDHVSEIQEP----RPQSYCAEW 747
+++S F S+S D VS E P SYCA+W
Sbjct: 21 SWFSSFSFGESKSTDLVSSTSEKIPGANPASYCADW 56
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +3
Query: 396 PHPNRFSFGSTLNNTPPPPHQCSATKKSSKRT*FSCL*TSVYQSSVSFASVFPTHQATLV 575
P+ NRFSF S + + +SSK + VY+ + S F + L
Sbjct: 255 PNKNRFSFASVAETGSGSNFSRATSSRSSKTR------SVVYEPNHRHTSFFGDTLSNLS 308
Query: 576 SKTSSKVSPG*KETSLDS 629
S + K SP LDS
Sbjct: 309 SSLNDKKSPNDDHAVLDS 326
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 278 NYSGVYHAVNRNILCAQPNARGLIGVENCLTLSIYTKNTTTSKPVFV 418
NYSG + ILC L G E+C T+ KN + + P+ +
Sbjct: 238 NYSGWTNMGWSFILCFTTPVWVLSGFESCATIVEEAKNASKAAPIAI 284
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 519 RRKFRGTKTMFSSTIF-L*LNTGVVVEAYCSALSQ-TKTGLDVVVFFVYMLSVRQFSTPI 346
R FRGTK F +TIF + +VE + S+ T L +FF+ + S+ +
Sbjct: 233 RGYFRGTKNSFKATIFEKNEDPDYIVEGVWTGESKLTIPSLKSTIFFLSIPSLEATPITV 292
Query: 345 RPRA 334
+P +
Sbjct: 293 KPES 296
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 365 LTLSIYTKNTTTSKPVFVWLNAEQYASTTTPVFS 466
L++ + N++T KP F W N+ Y +F+
Sbjct: 82 LSMELKKPNSSTIKPCFTWANSVLYNDILIFIFA 115
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 551 PDAPGNAGLKDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAALV 685
P P L D+L +L ++ P NI+ +G SGA L+
Sbjct: 181 PQFPFPCSLHDVLSSYLYLLKSTK-----PENIIFMGDSSGAGLI 220
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 396 PHPNRFSFGSTLNNTPPPPHQCSAT 470
P FSFG NN P P +AT
Sbjct: 459 PASGGFSFGQNANNAPKPAFGSTAT 483
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 551 PDAPGNAGLKDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGA--ALVDLLTMSPRS 712
P P + ++ + + W+ N + DP I +G +GA AL L + P S
Sbjct: 229 PKFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGASVALESLKHIRPNS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,593
Number of Sequences: 5004
Number of extensions: 79642
Number of successful extensions: 243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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