Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H20
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 42 4e-04
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 42 7e-04
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 34 0.11
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 33 0.25
08_01_0177 + 1504472-1505033,1505035-1506647 31 1.0
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 31 1.4
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 31 1.4
07_01_0037 + 301864-302349 30 1.8
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 3.1
08_02_1175 + 24927153-24927698,24928640-24929185 29 4.1
04_01_0615 - 8060085-8060972 29 4.1
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 29 5.5
07_03_0859 + 22054087-22055421 28 9.6
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +2
Query: 506 LNFRLSIFGFI--CLGVPDAP-GNAG--LKDILQGLTWLKRNIAGFGGDPNNIVLIGHGS 670
L RL+ G I C+ + P G G + D QG++++ NIA +GGDPN I L+G +
Sbjct: 166 LGRRLAERGIIVACIDYRNFPQGTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSA 225
Query: 671 GA 676
GA
Sbjct: 226 GA 227
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 575 LKDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAALVDLLTMSPRSKNLVHKAIALSGSA 754
++D QG+ ++ NIA +GGDP I L+G +GA + + L+H+AI SG
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIA--------ACTLLHQAIKESGEG 253
Query: 755 -LSPWAV 772
S W++
Sbjct: 254 DASTWSI 260
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 575 LKDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAALVDLLTMSPRSK 715
+ D G++++ + +GGDPN I L+G +GA + + +K
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAK 283
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 569 AGLKD-ILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAAL 682
AGL D IL LTW++ N+ GDP +L+ SGAA+
Sbjct: 75 AGLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSGAAV 113
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 287 GVYHAVNRNILCAQPNARGLIGVEN-CLTLSIYTKNTTTSKP 409
GV H R++L +P ARG++GVE+ L + + T++P
Sbjct: 107 GVEHLALRDVLIREPAARGVVGVEHLALRDVLIRERAATARP 148
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 534 SFASVFPTHQATLVSKTSSKVSPG*KETSLDSAETLTILCLLVMV 668
SF VF Q SSK+S K TSLD+A T ++L ++ ++
Sbjct: 195 SFHDVFQLRQGRYSDLPSSKISEMMKSTSLDNAPTQSLLSVVNVI 239
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 569 AGL-KDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAAL 682
AGL ++I++GL W++ +A GDP +L+ SGAA+
Sbjct: 31 AGLWEEIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAV 69
>07_01_0037 + 301864-302349
Length = 161
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 460 HWCGGGGVLFSVEPNENRFGCGRI 389
+WCGGGGV+ +V+ E GCG +
Sbjct: 87 YWCGGGGVVAAVDGME---GCGTV 107
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 587 GCL*DQRCLVRREHRGK*NRRLIDGSSEARKLCSLRRFFC 468
GCL ++ C+ + E+ K NR ++ G + KLC ++ +C
Sbjct: 26 GCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLC--KKIWC 63
>08_02_1175 + 24927153-24927698,24928640-24929185
Length = 363
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 283 LWSVSCCQSEYFVRPAQRPGPYWSRELSDTQHIHEKY 393
L SV+C +++ + P P WSR+ + + +H+ +
Sbjct: 314 LISVTCARNKLYAHFVTAPNPEWSRDEAVLRRLHQSF 350
>04_01_0615 - 8060085-8060972
Length = 295
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 702 DMVNRSTSAAPEP*PISTI--LLGSPPNPAMFLF--SQVRPWRMSLRPALPGASGTPRQM 535
+ V ++S P P P + L+ +P + F + V P ++ PALPGA TP Q
Sbjct: 89 ETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLPCLTTVGPALPGAPSTPSQP 148
Query: 534 KPKIDRRKFR 505
+ I R R
Sbjct: 149 RETILSRHDR 158
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 687 STSAAPEP*PISTILLGSPPNPAMFLFSQVRPWRMSLRPALP 562
S SA P P + ++ SPP P FS R S P +P
Sbjct: 79 SVSAPPPPSTAAVLIAPSPPPPPFLDFSHATLQRSSSTPNIP 120
>07_03_0859 + 22054087-22055421
Length = 444
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +2
Query: 524 IFGFICLGVPDAPGNAGLKDILQGLTWLKRNIAGFGGDPNNIVLIGHGSGAALVDLLTMS 703
+ F C +P +P +D+L G R G GG+ + G +DL
Sbjct: 133 VVDFACPFLPSSPDPWRRRDVLDGRVLFSRGAVGGGGEVD-----GQDDDPGFMDLAVCD 187
Query: 704 PRSKNLV 724
P S+ V
Sbjct: 188 PLSRRYV 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,541,078
Number of Sequences: 37544
Number of extensions: 600768
Number of successful extensions: 1954
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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