Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H17
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   247   1e-66
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    29   0.60 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   7.4  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   7.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   7.4  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    25   9.8  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   9.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.8  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  247 bits (605), Expect = 1e-66
 Identities = 117/192 (60%), Positives = 150/192 (78%), Gaps = 1/192 (0%)
 Frame = +1

Query: 202 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 381
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 382 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 558
             + QVI  STDSE+SHLA+INTPRK+GGLG + IPLLAD   ++S+DY VL++D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 559 RGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIK 738
           RGLF+ID  G LR +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+    +DTI 
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI- 180

Query: 739 PNPKDSKEYFQK 774
            + K+ ++YF K
Sbjct: 181 -DTKNPEKYFSK 191


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 265 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 441
           ++L D T  K +V+F YP   T  C  +   F D        D +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 172 FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 345
           F+ +S+T     Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 707 QPAGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRSIMNKPLNANP 546
           Q +G   P LS N    TR  +   +        D+ R+VP +S+  K  +A+P
Sbjct: 634 QSSGRPGP-LSPNLNVTTRIDIKGKKGSMHLQPRDVNRKVPFKSMHTKSKSADP 686


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 151 KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 330
           KV +R N    +T   P++        A ++++   N++  +DF GK+ +++F       
Sbjct: 79  KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132

Query: 331 VCPTEL 348
           +CP EL
Sbjct: 133 ICPDEL 138


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 706  WNPDTNADTIKPNPKDS 756
            WNP+   D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 337 PTELIAFSDKAKDFAG-IDCQVIGVSTDSEFSHLAWINTPRKD--GGLGKMEIP 489
           PT+L+AF  + + + G +  +V+ VS D E   L  +N P ++  G  G M  P
Sbjct: 182 PTKLVAFKQRKERYPGELQWEVL-VSQDEE--RLRKLNLPLREPHGSTGPMSTP 232


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 701 AGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRS 576
           A  T+  +SA+ +ALT R +++ E  + R F      VPLR+
Sbjct: 91  ANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRA 132


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 SPAFKVAKRINFSTTSTTRAPKVQKPA 219
           +PA KV+ R +FS      AP V++PA
Sbjct: 160 NPAVKVSLRQSFSHLCHDEAPMVRRPA 186


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 87  HARKNVVHCEATKSKCTVAGFQSSKKD 167
           H  K+  HC     KC+V GF    +D
Sbjct: 813 HLGKSCPHCGQPLPKCSVCGFSLGDED 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,509
Number of Sequences: 5004
Number of extensions: 66517
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)