Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H17
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 141 5e-34
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 97 2e-20
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 83 3e-16
06_01_0671 - 4899611-4899829,4900870-4901448 65 7e-11
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 64 1e-10
12_01_0809 + 7422137-7422251,7425578-7426353 33 0.36
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 31 0.83
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 30 1.9
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156... 30 2.5
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 30 2.5
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 29 4.4
01_06_1608 - 38612754-38616947,38617030-38617095 29 5.9
01_06_0460 + 29545030-29546377,29546463-29547085 29 5.9
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 141 bits (342), Expect = 5e-34
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Frame = +1
Query: 424 FSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIIDRNGTLRH 600
FSHLAW+ T RK GGLG ++ PL++D K ISK + VL+ D G ALRGLFIID+ G ++H
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 601 MSVNDLPVGRSVDETLRLVKAFQFA-DKHGEVCPAGWNPDTNADTIKPNPKDSKEYF 768
++N+L +GRSVDET+R ++A Q+ D EVCPAGW P ++KP+PK SKEYF
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDK--SMKPDPKGSKEYF 326
Score = 97.9 bits (233), Expect = 8e-21
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +1
Query: 196 APKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAK 372
AP V APDF A AV + EF +KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSD+
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYD 126
Query: 373 DFAGIDCQVIGVSTDSEFS 429
+F ++ +++GVS DS +S
Sbjct: 127 EFEKLNTEILGVSIDSVWS 145
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 96.7 bits (230), Expect = 2e-20
Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = +1
Query: 499 DYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFA 675
+++K ++ V +D G ALRGLFIID+ G ++H ++N+L +GRSVDETLR ++A Q+
Sbjct: 63 EFEKINTEVLGVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 122
Query: 676 DKH-GEVCPAGWNPDTNADTIKPNPKDSKEYF 768
++ EVCPAGW P ++KP+PKDSKEYF
Sbjct: 123 QENPDEVCPAGWKP--GEKSMKPDPKDSKEYF 152
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 328 FVCPTELIAFSDKAKDFAGIDCQVIGVSTDS 420
FV E+ AFSD+ ++F I+ +V+GVS DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 83.0 bits (196), Expect = 3e-16
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Frame = +1
Query: 262 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 438
++++ DF G YV+LF +P DFT VC TEL A + AK+F +++G+S D SH
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 439 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 597
WI ++ P++AD ++ K +++ D G L R L I+ + ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175
Query: 598 HMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKD--SKEYF 768
+ VGR++DE +R V A Q A KH P W P I P D +KE F
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERV-VIPPGVSDDEAKEKF 233
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 64.9 bits (151), Expect = 7e-11
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Frame = +1
Query: 76 KSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGE 255
+S + HA +++QLS + A +VA+ + S+ + K AP+F+ + +
Sbjct: 84 RSTMMHAAAWLLLQQLSPA----AARVARAAD--DDSSVQVSK-GSAAPNFTLR---DQD 133
Query: 256 FNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHL 435
+ LS F G+ VV++FYP D T C + AF D + F +VIG+S D SH
Sbjct: 134 GRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHK 193
Query: 436 AWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG--LFIIDRNGTLRHMSV 609
+ +K K+ LL+D ++ K++ V D L G +++D+NG ++++
Sbjct: 194 EF---KKK----YKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYN 246
Query: 610 NDLPVGRSVDETLRLVKA 663
N + + ETL+++++
Sbjct: 247 NQFQPEKHIGETLKILQS 264
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 64.1 bits (149), Expect = 1e-10
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Frame = +1
Query: 262 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 438
+++L DF G YV++F +P DFT VC TEL + A +F +++G S D SH
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 439 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 597
WI ++ P++AD ++ + +++ D G L R L I+ + ++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140
Query: 598 HMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSK 759
+ GR++ E LR A A +H P W P I P D +
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERV-VIPPGVSDEE 193
>12_01_0809 + 7422137-7422251,7425578-7426353
Length = 296
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -3
Query: 743 FGLMVSALVSGFQPAGHTSPCLSANWKALTRRSVSSTER 627
FG+++ L++G P H SP SA++ A + S ++T+R
Sbjct: 169 FGVVLMELLTGRGPGDHASPSTSASFSAPSSSSAATTDR 207
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 31.5 bits (68), Expect = 0.83
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Frame = +1
Query: 241 VVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCP-TELIA-FSDKAKDFAGIDCQVIGVST 414
+++ + +++ +SD GKYV L F + V T L+A F +K K+ G +V+ VS
Sbjct: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKE-VGEKFEVVAVSL 239
Query: 415 DSE-------FSHLAWINTPRKD 462
DS+ F+ + W+ P++D
Sbjct: 240 DSDEELSNESFAGMPWLAIPQED 262
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +1
Query: 235 TAVVNGEFNQLK-------LSDFTGKYVVLFFYPLDFTFVCPTELIAFS---DKAKDFAG 384
TA + G FN L DF GK+ +L+F +CP EL + DK K+ A
Sbjct: 178 TAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAK 237
Query: 385 IDCQVIGVSTDSE 423
++ + ++ D E
Sbjct: 238 MEVVPVFITVDPE 250
>06_03_0251 +
18715023-18715106,18715274-18715396,18715509-18715611,
18716061-18716134,18716208-18716288,18716370-18716522,
18717435-18717506,18718313-18718396
Length = 257
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 76 KSLLTHAKMSFI--VKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQ-KPAPDFSATAVV 246
++ +TH K F+ QL +VLS K+ ++ + K KP D SA+ +
Sbjct: 128 EAAVTHCKGHFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRAL 187
Query: 247 NGEFNQL 267
E+NQL
Sbjct: 188 LEEYNQL 194
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 725 ALVSGFQPAG--HTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRV 588
A+ G P +P SA W AL RRS ++T R GR ++ RRV
Sbjct: 84 AMEGGEDPGSPPRAAPAPSACWSALCRRSPAAT-RKIGRKIQELNRRV 130
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 764 YSLLSLGFGLMVSALVSGFQPAGHTSPCLSAN 669
YS +S G+G S+L +PAGHT CL A+
Sbjct: 375 YSPMSYGYG-NPSSLEESHRPAGHTRYCLVAS 405
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 103 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQK 213
SF+ +++SRS S +V R+ FST +T A + K
Sbjct: 165 SFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICK 201
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 639 VHGAAHGQIVHRHVTQGAITVD 574
+HG + G++ HRH+T I VD
Sbjct: 478 LHGVSGGKLAHRHLTSSNILVD 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,878
Number of Sequences: 37544
Number of extensions: 435706
Number of successful extensions: 1271
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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