Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H15
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0585 + 4332352-4332445,4332552-4332667                           79   2e-15
06_03_0967 - 26395537-26396590,26400918-26401111                       48   4e-06
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    30   1.3  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   2.3  
06_01_0763 + 5712466-5712721,5714302-5715743                           28   4.0  
11_01_0768 - 6442332-6443792                                           28   5.3  
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312...    27   9.3  
06_01_0286 - 2094920-2097805                                           27   9.3  

>02_01_0585 + 4332352-4332445,4332552-4332667
          Length = 69

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 39/68 (57%), Positives = 46/68 (67%)
 Frame = +3

Query: 105 MDQLAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 284
           MD +   V+P ++FAKDS+RLV+RC KPDRKEF K+A  TA            VKLI IP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 285 INNIIVGS 308
           INNIIVGS
Sbjct: 61  INNIIVGS 68


>06_03_0967 - 26395537-26396590,26400918-26401111
          Length = 415

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 29/37 (78%)
 Frame = +3

Query: 105 MDQLAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIA 215
           MD +   V+P ++FAKDS+RLV+RC KPDRK  +++A
Sbjct: 1   MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGRERLA 37


>08_01_0649 +
           5607234-5608397,5609358-5609513,5609598-5609796,
           5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -2

Query: 305 ADNYVINGDMNQLYKESNEAHDAKSDGCCN--GNLLEFFPIRFC--ASSH*SDGVLSELL 138
           AD Y  NGD    Y+ +   HD+ + G  N  GNL   FP++    AS+H  + +L  LL
Sbjct: 338 ADEYSSNGDPGDEYRGNYVNHDSANYGRANKFGNL--NFPVKSIVDASAHEGELLLRRLL 395

Query: 137 ARLDEFCEL 111
                F  L
Sbjct: 396 ENFPMFNNL 404


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 221 CNGNLLEFFPIRFCASSH*----SDGVLSELLARLDEFCELIHY*INNS 87
           C  +L   F ++F  ++H      DGV + LL  LDEF +LIH    NS
Sbjct: 345 CTDSLPVLFKLKFKFANHDRVFSGDGVGTVLLQILDEFLQLIHIIFCNS 393


>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 HCNSHRILHHGLHWILCKADSY 280
           +C+ HR   H + W++ + DSY
Sbjct: 280 YCDDHRQFLHRVQWVILRTDSY 301


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 138 KQFAKDSIRLVRRCTKPDR 194
           +QF KD+I  V+ C KPD+
Sbjct: 111 EQFTKDAIAAVQECKKPDK 129


>10_08_0005 +
           14030414-14030519,14030612-14030921,14031012-14031233,
           14031326-14031565,14031727-14031804,14031841-14032036,
           14032084-14032265,14032351-14032433,14032526-14032650,
           14032762-14032840,14032924-14033092,14033171-14033231,
           14033312-14033434,14033552-14033749,14033927-14033995,
           14034244-14034320,14034475-14034562
          Length = 801

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 47  LNHCRRXLTIKRLLNY*FNNGSARKIRRAWQAIR*GLHQISEKMHK 184
           LNH R+ L  K L+ +   +G       A +A+  G H  ++ +HK
Sbjct: 321 LNHARKILHGKSLIIFNSKDGKLLVFLSANRAVDSGAHNATDSLHK 366


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 125 EFCEL---IHY*INNSTSVLLLXHVDNDLIAXXPNSKTYNLQ 9
           ++CEL   I   + N T++  L   DN LI   P SK  NLQ
Sbjct: 263 DYCELHGSIPESVGNLTALNTLYLADNSLIGAIPISKLCNLQ 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,167,518
Number of Sequences: 37544
Number of extensions: 172730
Number of successful extensions: 317
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)