Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H13
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 35 0.090
06_01_1181 + 10148653-10149405 33 0.36
07_03_0518 + 19007793-19008722 31 1.1
07_03_0512 - 18954515-18955972 31 1.5
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 30 1.9
07_03_0514 + 18984375-18985865 29 3.4
12_02_0168 + 14827529-14828050 29 5.9
09_03_0006 + 11426346-11426420,11426733-11427452 29 5.9
08_01_1010 - 10215625-10216335,10216372-10216473 29 5.9
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 7.8
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 28 7.8
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 34.7 bits (76), Expect = 0.090
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 234 GTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT 413
GT + + A PT+ T L + P+T + + STAT + S P T
Sbjct: 473 GTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTREL--STATGKIPSTPRT 530
Query: 414 ---TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 548
+ A S I T + IPSTP+ + +TG +PST CT
Sbjct: 531 NPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCT 578
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 347 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 475
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 484 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 356
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 484 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 362
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 30.3 bits (65), Expect = 1.9
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 449 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSR--YGLYLKDRAYPITDLTAPLIDP 622
+V R R +D A ++ HL+R +DRLYPS+ G L AY ++ L+
Sbjct: 314 YVERSREREIDRLYAGRSL--HLERDGEMDRLYPSKGVLGADLAPSAY--AGSSSSLLAK 369
Query: 623 LKPKSL-KGIEYEPDN 667
+P L G YEP N
Sbjct: 370 ERPYRLHDGTSYEPTN 385
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 484 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 356
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>12_02_0168 + 14827529-14828050
Length = 173
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 548 GTAGRWQPACRDGPAMPCGRRR 483
G AGRW+ CR G + P GRRR
Sbjct: 22 GGAGRWR--CRSGRSAPGGRRR 41
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 279 PTLTPSRFTT-TLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 455
P L P T T L PA + C + + + P M T ++LS + G + T
Sbjct: 161 PALRPMSLTRLTPFAALSTSTCPAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATA 218
Query: 456 QDACDVELIPSTPT 497
+ ++PS+PT
Sbjct: 219 EPRHAPRIVPSSPT 232
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.7 bits (61), Expect = 5.9
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +3
Query: 216 TSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRA 395
++ PR+ P + R +P +T + P R P R+ +
Sbjct: 76 STPPRRAASPDYTPSTPTTPRRAASPD-YTPSTPTPPRRAASPDYTPSTPPPRAASPDYT 134
Query: 396 LSMPTTTL-ALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPST 539
S PT A S ST + A + PSTPT R S + PST
Sbjct: 135 PSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRRAASLDYTPST 183
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 535 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 440
D V V C++ + G+ T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 18 GPTLDVGSSTTPHYPI*LRPLFNRIRARHRPPKCSKHI 131
GPT SS+ H P RIRA P+CSKH+
Sbjct: 47 GPTSSSSSSSDEHEP-------RRIRAEAHCPRCSKHM 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,669,038
Number of Sequences: 37544
Number of extensions: 522265
Number of successful extensions: 1667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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