Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H11
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    33   0.038
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    27   1.9  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.7  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 347 ITNSFQMGRRWKTNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 490
           +T SF    RWK   K I ++KS  D+  ++ L  G  ++K+ VDG W
Sbjct: 114 VTGSFS---RWK---KKIQLLKSE-DYTVLLQLRPGTQRFKFLVDGIW 154


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 34  LHPSHHLKIKWGMPXVTNPKHG 99
           +H     KI W +P   NPKHG
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 379 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 287
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,955
Number of Sequences: 5004
Number of extensions: 49918
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)