Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H11
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 46 3e-05
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 42 3e-04
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 35 0.052
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 33 0.16
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 30 2.0
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 29 3.4
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 29 4.5
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 29 4.5
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 29 4.5
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 29 4.5
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 6.0
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 28 6.0
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 28 7.9
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 383 TNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEWRHDPT 505
T W+ PM +F + DLP G +QY++ VDG WR D T
Sbjct: 22 TGWRECPMGLVGAEFQVVFDLPPGVYQYRFLVDGVWRCDET 62
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/51 (43%), Positives = 26/51 (50%)
Frame = +2
Query: 347 ITNSFQMGRRWKTNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEWRHD 499
+T SF RW + P+ F I L G HQYK+ VDGEWRHD
Sbjct: 74 LTGSFT---RWTEHLPMSPVEGCPTVFQAICSLSPGIHQYKFCVDGEWRHD 121
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 386 NWKTI-PMVKSHGDFVTIIDLPEGEHQYKYFVDGE 487
NWK+ PM KS D ++ LP G ++Y++ VDGE
Sbjct: 177 NWKSRKPMQKSGKDHSLLLILPSGVYRYRFVVDGE 211
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 386 NWKTIPMVKSHG-DFVTIIDLPEGEHQYKYFVDGEWRHDP 502
NWK+ +V G D ++ L G ++Y++ VDGE R P
Sbjct: 148 NWKSKQLVHKCGKDHCVMLGLASGVYRYRFIVDGERRFQP 187
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 386 NWKTIPMVKSHG-DFVTIIDLPEGEHQYKYFVDGEWRHDP 502
NW + +++ G D ++ LP G + Y+ VDGE ++ P
Sbjct: 167 NWTSRRVLEKSGKDHTILLVLPSGVYHYRIIVDGEPKYVP 206
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 449 EGEHQYKYFVDGEW 490
EG ++YKY VDG+W
Sbjct: 200 EGRYEYKYIVDGKW 213
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 365 MGRRWKTNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVD 481
+ RRW+ W+T+P + + E ++K FV+
Sbjct: 577 LSRRWRNLWRTVPCINADCKEFDFFGFRRSEVEFKRFVN 615
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 383 TNWKTIPMVKSHGD--FVTIIDLPEGEHQYKYFVDGEWRHDPTV 508
+NWK G + I L G++ YK+ G+WRH ++
Sbjct: 478 SNWKDKVKCDHKGGSRYEAEIRLRHGKYYYKFIAGGQWRHSTSL 521
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 31 NLHPSHHLKIKWGMPXVTNPKHGIKLLTNRL 123
N P H ++W P +TN + I +L +RL
Sbjct: 296 NRPPGQHNLVEWARPYITNKRRVIHVLDSRL 326
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 425 FVTIIDLPEGEHQYKYFVDGEWR 493
F ++L G ++ K+ VDGEWR
Sbjct: 420 FSATLNLRPGRYEIKFLVDGEWR 442
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 72 AGSHQPKAWHKAANKSPDHXQGPSSPAKEGEAFTFDKK 185
+G QP A SPD QG P+ +GE T D+K
Sbjct: 252 SGEQQPSGVDPA-ELSPDQVQGDVDPSDKGEESTADQK 288
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 496 MPPFSINKIFVLMFTFW*IYYC-NKITM*FYHGNSFPICFPPPSHLKTVGN 347
+PPF + F++ F W I YC +++ M +HG PI HL G+
Sbjct: 60 LPPFLGTQGFLIHFADWHIEYCMHRVNMLRHHGVK-PILVFDGGHLPMKGD 109
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 365 MGRRWKTNWKTIPMVKSHGDF 427
+ RRW+ W+T+P V H DF
Sbjct: 90 LSRRWRDVWRTVPRV--HADF 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,104
Number of Sequences: 37544
Number of extensions: 316378
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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