Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H11
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical...    53   2e-07
Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    29   4.1  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    28   7.1  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    28   7.1  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    28   7.1  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical
           protein Y47D3A.15 protein.
          Length = 274

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +2

Query: 386 NWKT-IPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 490
           NW+T IPMVKS  DF TIIDL  G+++YK+ VDG W
Sbjct: 86  NWQTRIPMVKSTNDFSTIIDLQPGQYEYKFQVDGSW 121


>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +2

Query: 389 WKT-IPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 490
           W T IP+VKS  DF TI+DL  G+H+YK+ VD +W
Sbjct: 82  WNTKIPLVKSTSDFSTIVDLEPGKHEYKFMVDSKW 116


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 377 WKTNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 490
           WK   K   +V   G     ++L  G H++++ ++GEW
Sbjct: 517 WKCTLKCEKLVS--GKKGVTVNLTRGRHEFRFMINGEW 552


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 377 WKTNWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 490
           WK   K   +V   G     ++L  G H++++ ++GEW
Sbjct: 514 WKCTLKCEKLVS--GKKGVTVNLTRGRHEFRFMINGEW 549


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 TILKYYQQFSNGKEVENKLENYSHGKITW*FCYNNR 441
           T ++Y Q++   K V N + N     +TW F  N+R
Sbjct: 355 TAIRYAQKYFKSKMVWNDVRNVHPKSLTWHFSENSR 390


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 TILKYYQQFSNGKEVENKLENYSHGKITW*FCYNNR 441
           T ++Y Q++   K V N + N     +TW F  N+R
Sbjct: 355 TAIRYAQKYFKSKMVWNDVRNVHPKSLTWHFSENSR 390


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 TILKYYQQFSNGKEVENKLENYSHGKITW*FCYNNR 441
           T ++Y Q++   K V N + N     +TW F  N+R
Sbjct: 355 TAIRYAQKYFKSKMVWNDVRNVHPKSLTWHFSENSR 390


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 IEYTEQRERSNTLTDGSKIVDDIKVLP 353
           IE+   RER N L  GSK  D++ ++P
Sbjct: 143 IEFERNRERFNFLKWGSKAFDNLLIVP 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,779
Number of Sequences: 27780
Number of extensions: 279342
Number of successful extensions: 652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)