Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H09
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 231 4e-62
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 231 4e-62
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 147 7e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 147 7e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 147 7e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 90 2e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 43 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 7e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 38 7e-04
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 8.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 231 bits (566), Expect = 4e-62
Identities = 109/123 (88%), Positives = 113/123 (91%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 189 IQKESTLHLVLRLRGGTIEPSLRILAMKYNC*KMICRKCYARLHPRATNCRKTKCGHTNN 368
IQKESTLHLVLRLRGG IEPSL+ LA KYNC K ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 369 LRP 377
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 231 bits (566), Expect = 4e-62
Identities = 109/123 (88%), Positives = 113/123 (91%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 189 IQKESTLHLVLRLRGGTIEPSLRILAMKYNC*KMICRKCYARLHPRATNCRKTKCGHTNN 368
IQKESTLHLVLRLRGG IEPSL+ LA KYNC K ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 369 LRP 377
LRP
Sbjct: 121 LRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (357), Expect = 7e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
MQIFVKTLTG ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 189 IQKESTLHLVLRLRGG 236
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 89.8 bits (213), Expect = 2e-19
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
M I VKTLTG I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 189 IQKESTLHLVLRLRGGT 239
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 54 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLR 230
+V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +V R +
Sbjct: 17 DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCMVSRPK 76
Query: 231 GGTIEP 248
T P
Sbjct: 77 TSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 7e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 9 MQIFVKTLTGXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 188
+ + +K + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 189 IQKESTLHLVLRL 227
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 36 GXPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 209
G LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.9
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 30 LTGXPITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 200
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 201 STLH 212
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,292
Number of Sequences: 5004
Number of extensions: 40156
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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