Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H02
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 31   1.4  
SB_19877| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6)                  29   4.4  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 29   5.8  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   5.8  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             28   7.6  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  28   7.6  
SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   7.6  

>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 364  VPAPPSIATLLPHQSSHTPPTLH-QYLLVTVMDTG*KNVPWVTWLTVLPSSLQLRFLTSP 540
            +P  P   TLLP    + P ++   ++ VT+ D G  N   VT   V  + +Q+  +TSP
Sbjct: 1610 LPDAPLDVTLLPSAPDNAPNSMEVAWMPVTISDNGTSNGARVTGYKVYINDVQVAEVTSP 1669


>SB_19877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +2

Query: 683 PRRXXTWSGRTI---RARNHHSLCPSCWTLPFRPLGTLXP 793
           P+R   WS       R    H LC S W    +PLGT  P
Sbjct: 67  PKRKQVWSSWNYLSDRTDQQHQLCVSYWMNRLQPLGTEHP 106


>SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 121 LAAPFCRWRSPRIIPLSSWTPTAGLWTPRKSSTLALSTF 237
           L  P C W S  +IPLS +  +    T       ALS F
Sbjct: 92  LTGPMCFWYSQGVIPLSGFLASVAAATATTGGLFALSYF 130


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 204  RCPEAGRGGPGRQRDDAGAAPPAKRSR 124
            RC  A  GGPG +R  AG A   +R R
Sbjct: 1361 RCGAAAAGGPGAERAAAGTALARRRCR 1387


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 364 VPAPPSIATLL-PHQSSHTPPTLHQYLLVTVMDTG*KNVPWVTWLTVLP 507
           +PA P+  T++ P +     PTL++Y   +      K + WV WL V+P
Sbjct: 448 IPANPAEGTVVGPGELPSAQPTLYEYYFDS------KKLLWVPWLDVVP 490


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 515  SDDGSTVSQV-TQGTFFQPVSMTVTSKYWCSVGG 417
            S DG+T++ + TQGT   P+SM  T+    S GG
Sbjct: 1200 STDGTTIASMSTQGTTVSPMSMDRTTAVPISTGG 1233


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 428 SVGGVCEDWCGNSVAIDGGAGTYIN 354
           +VGG   D CGN V  D  A +Y+N
Sbjct: 139 AVGGKLTDICGNEVVYDFDAESYLN 163


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 195 EAGRGGPGRQRDDAGAAPPAKRSRKPQR 112
           ++ R G  R RD +  +PP  RSR P R
Sbjct: 186 QSDRKGKHRHRDSSSPSPPRHRSRSPFR 213


>SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 446

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 644 CWGYCSDHGGSIGVSYDGSSDCVGDDC 564
           CWG   D  GSI V   G+   V DDC
Sbjct: 304 CWGPKDDGKGSIYVWATGNGGLVDDDC 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,212,991
Number of Sequences: 59808
Number of extensions: 394535
Number of successful extensions: 1406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)