Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_G23
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 31 1.3
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 31 1.3
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 31 1.3
AF125459-11|AAD12842.2| 315|Caenorhabditis elegans Serpentine r... 28 6.9
Z72510-2|CAA96652.1| 267|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z68012-2|CAA92020.1| 408|Caenorhabditis elegans Hypothetical pr... 28 9.1
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical
protein F32D8.5b protein.
Length = 227
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = +3
Query: 258 KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPML---IREASSIGSTSLLVAI 428
K P G++K + + +K KI SL +S+AG+ + P+L + EA++ + ++ AI
Sbjct: 56 KGTLPPGSQKTPHDVVAMGVKGAKILSLSSSLAGVVMVPVLSSYLWEAAAERPSMMMFAI 115
Query: 429 CSVVGFFTF-VTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDV 596
+ TP+LLHF+ K++ +I+YN + + + NF K+ F +V
Sbjct: 116 VANTFLVLLSFTPLLLHFLAKRFPIDIFYNNDKKVFTTVHYNFLMQKQALRFSASEV 172
>Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical
protein F32D8.5a protein.
Length = 225
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = +3
Query: 258 KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPML---IREASSIGSTSLLVAI 428
K P G++K + + +K KI SL +S+AG+ + P+L + EA++ + ++ AI
Sbjct: 54 KGTLPPGSQKTPHDVVAMGVKGAKILSLSSSLAGVVMVPVLSSYLWEAAAERPSMMMFAI 113
Query: 429 CSVVGFFTF-VTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDV 596
+ TP+LLHF+ K++ +I+YN + + + NF K+ F +V
Sbjct: 114 VANTFLVLLSFTPLLLHFLAKRFPIDIFYNNDKKVFTTVHYNFLMQKQALRFSASEV 170
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = +3
Query: 273 IGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFFT 452
+ EK++ + ++++++ L T+ AGI + ++ + + LL I + T
Sbjct: 909 LSAEKVHLDSEDEELESLEELELYTTDAGIQTETKVMLDKQDNATPKLLEIIKNCSTQTT 968
Query: 453 FVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD--VPGMFT 626
F T H K +Y +A TS+ + N ++ + K E F+ + V M T
Sbjct: 969 FST---FHIPQK-----VYESASTSSDEEDHKNDGEDEKQKKSKQEVFFMTNTGVQTMHT 1020
Query: 627 TMHANGKPLFIEARFFNNPLH 689
+ H + KP F+E H
Sbjct: 1021 SFHIDEKPKFVEENLQTQNTH 1041
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = +3
Query: 273 IGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFFT 452
+ EK++ + ++++++ L T+ AGI + ++ + + LL I + T
Sbjct: 909 LSAEKVHLDSEDEELESLEELELYTTDAGIQTETKVMLDKQDNATPKLLEIIKNCSTQTT 968
Query: 453 FVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD--VPGMFT 626
F T H K +Y +A TS+ + N ++ + K E F+ + V M T
Sbjct: 969 FST---FHIPQK-----VYESASTSSDEEDHKNDGEDEKQKKSKQEVFFMTNTGVQTMHT 1020
Query: 627 TMHANGKPLFIEARFFNNPLH 689
+ H + KP F+E H
Sbjct: 1021 SFHIDEKPKFVEENLQTQNTH 1041
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = +3
Query: 273 IGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFFT 452
+ EK++ + ++++++ L T+ AGI + ++ + + LL I + T
Sbjct: 909 LSAEKVHLDSEDEELESLEELELYTTDAGIQTETKVMLDKQDNATPKLLEIIKNCSTQTT 968
Query: 453 FVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD--VPGMFT 626
F T H K +Y +A TS+ + N ++ + K E F+ + V M T
Sbjct: 969 FST---FHIPQK-----VYESASTSSDEEDHKNDGEDEKQKKSKQEVFFMTNTGVQTMHT 1020
Query: 627 TMHANGKPLFIEARFFNNPLH 689
+ H + KP F+E H
Sbjct: 1021 SFHIDEKPKFVEENLQTQNTH 1041
>AF125459-11|AAD12842.2| 315|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 24 protein.
Length = 315
Score = 28.3 bits (60), Expect = 6.9
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 333 FSLCTSIAGIAIQPMLIREASS--IGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEI 506
+ L TS A I+I L+ S IG S L C ++ + F TP + ITK Y T
Sbjct: 68 YYLYTSEAIISIYDTLVAAFFSRLIGRVSPL---CPIIAPY-FFTPSI---ITKTYYTMS 120
Query: 507 YYNAETSTYKAITINF 554
YNA T I I+F
Sbjct: 121 TYNAAFKTISQIVISF 136
>Z72510-2|CAA96652.1| 267|Caenorhabditis elegans Hypothetical
protein F53B7.3 protein.
Length = 267
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 254 TEGRNTYRHRKNILRNINTSDKGY 325
TEG RHR ++LRNI+ GY
Sbjct: 141 TEGEEQRRHRADLLRNIDAHYFGY 164
>Z68012-2|CAA92020.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.2 protein.
Length = 408
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 172 ANLLSLPNCFRHKRXMILINKYNLTC 95
A+L+SLP ++R +++INKY C
Sbjct: 365 ADLVSLPTTKPNERLVVIINKYYFEC 390
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 303 LTPQIKAIKIF-SLCTSIAGIAIQPMLIREASSIGSTSLLVAICSV 437
L+P ++AI + + C+ I G +++RE S SLL +C +
Sbjct: 216 LSPTLEAISVCRATCSVIVGKDDHMVMVRERGQFSSFSLLKKMCQI 261
>AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical
protein K04F1.13 protein.
Length = 548
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 318 KAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFF 449
+++ F CTSIAG A + I + S + S+L ++ + G F
Sbjct: 183 RSLLYFPKCTSIAGSANGGLKISQISEAHNVSVLTSLKKIEGVF 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,595
Number of Sequences: 27780
Number of extensions: 382450
Number of successful extensions: 1004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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