Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_G21
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    55   1e-08
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.33 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.4  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   3.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   5.4  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   7.2  
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    26   7.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   7.2  
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    26   7.2  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   9.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.5  

>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +1

Query: 277 LYKLIFRVHR-GLPPELRVLGDNYARDEFKRHKKCNKDEAKI-FLNEWTDYAINLAKQMK 450
           LY+ + R HR  L  E R LGD Y + EF+RH+        + FL+ W  YA  L  +  
Sbjct: 20  LYRRVLRAHRYHLGAEERALGDEYVKAEFRRHRNVTNPLHLVGFLSSWERYADALENES- 78

Query: 451 PLHQAKNKMVGEYLDPSLLDHMSDEQIVQLYELHKA 558
              Q K      Y +  LL+ ++D+QI QLYEL KA
Sbjct: 79  -WKQEK------YSNTDLLESLNDQQIGQLYELSKA 107


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 VSWETTTPGTSSSDTKNVIRTRLRFFSTNGRTTPLT 433
           VSW +TTP T +S +K    T +   STN  +T  T
Sbjct: 617 VSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFT 652


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 642 LLRFPYNSRSNALQQPSAGDASKVSPLSFHRFFCY 746
           LL+ P ++R   L++ +   A+ VSP+ FH  +C+
Sbjct: 62  LLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYCF 96


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 484  EYLDPSLLDHMSDEQIVQLYELHK 555
            +YLDPSLLD    E + ++ EL K
Sbjct: 1307 KYLDPSLLDFFCSEFVPKITELSK 1330


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 187 SATNLLRFSRFYRLLAVRMSSPEHVSRVRRLYKLIFRVHRGLP 315
           SA  L R  ++  + ++ + S   +   R+  KLI R  +G+P
Sbjct: 118 SAKELSRIQKWKSMCSIHLVSGNQLHSFRKTRKLILRTFKGIP 160


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 621 CAVALKALLRFPYNSRSNALQQPSAGDASKVSPLSF 728
           C    K  L+ P NS S+A Q PS+  ++ V   +F
Sbjct: 502 CRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLTRNF 537


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 675 ALQQPSAGDASKVSPLSFHRFFCYYGGFNFKKHFFLII 788
           AL +   GDA K+   ++  F C Y  F      FL++
Sbjct: 251 ALMKDDVGDAEKLPTENWFDFICNYVSFMVGSIIFLVV 288


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 118 NYNCCFKIIFSIDDGSTQVWCSLYGTV 38
           ++  C K IF + + S  +W  L+G +
Sbjct: 74  SFYLCVKSIFHVHNESVNIWTHLFGAI 100


>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 225 VIGGSDVITRTCVAGSPALQIDLPGSPGLAARTPCPGRQ 341
           ++   D   +    G  AL I +  + G A +TP PG Q
Sbjct: 63  MLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQ 101


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 335 ETTTPGTSSSDTKNVIRTRLRF 400
           E T PG+S SDT +V + R+ F
Sbjct: 868 EPTPPGSSDSDTASVSKKRVDF 889


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 225 VIGGSDVITRTCVAGSPALQIDLPGSPGLAARTPCPGRQ 341
           ++   D   +    G  AL I +  + G A +TP PG Q
Sbjct: 63  MLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQ 101


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 450 LHLLGKVNGVVRPFVEKNLSLVLITFFVSLELVPGVVVSQDTEFGRQAPVNPEDQFVEP 274
           +H+L    G   PF    +S +L       E  P V +S DT+F       P +Q   P
Sbjct: 100 VHVLRSTTGYRAPFSRHPISYILANSSSRTESEPNVQIS-DTDFD-NISTEPRNQTTSP 156


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 30  CIETVPYKLHQTCVEP 77
           C ET P   H TC++P
Sbjct: 277 CCETCPNSFHFTCIDP 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,940
Number of Sequences: 5004
Number of extensions: 61129
Number of successful extensions: 196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)