Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_G12
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.59 
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    27   2.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   3.1  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   3.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.5  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    26   5.5  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    26   7.2  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    26   7.2  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   9.6  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.6  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.6  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 37/155 (23%), Positives = 68/155 (43%)
 Frame = -3

Query: 711 VTVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPNSSL*FLTSYLTGC 532
           VT+S     +ST   S S   TS + +++P      SQIS  S SP+S+  F  S     
Sbjct: 121 VTLSCGQAFTSTVDISSS---TSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSASVSS 177

Query: 531 QLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNILSSD 352
           ++       + + ++       SS+TN ++ +T   S P  S    S + +   +I S++
Sbjct: 178 KV------ASSVSYVSSEPSDSSSSTNTVILTTSVNS-PAVS----SSETLTSVSITSTE 226

Query: 351 PSITLHLKIASSPSSVSGWISYETPYLYFAFSSTI 247
            + T      ++ ++ S  +   T     +FS+ I
Sbjct: 227 SAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDI 261


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 389 PETDNFEYVGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEK 520
           P   NFE   PD  + + T    A D++L  KT + I +  D K
Sbjct: 35  PSKKNFETQSPDEPSPKTTDSTGARDANLSLKTQEPIVSADDAK 78


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -3

Query: 750 CLSFSGSMNMRNLVTVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPN 571
           C S S S N  NL T          + + Q   + +  D  NP    K S+I   +K P+
Sbjct: 420 CASSSSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLHDKGNPTALSKDSEIDSSTKKPS 479


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +2

Query: 287 YEIHPETDDGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAED 466
           Y ++P  D  +  + + +    S+D     ++   E D  ++   D Q VEN +K +++D
Sbjct: 577 YLLYPSYDLPDRNLSEHSYSSSSDDEQRISELNDRELDEIDWQAAD-QDVENALKDLSDD 635

Query: 467 SDLETKTI 490
           +D +T +I
Sbjct: 636 NDFDTGSI 643


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 720 SCSWIPKMINMLITYLTVSKTNSS 791
           +CSWI ++ ++ +TY+T+S  ++S
Sbjct: 336 NCSWIGRIWSIKLTYMTLSGASTS 359


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 336 HLKIASSPSSVSGWISYETPYLYFAFSSTIILFTAPLL 223
           HL  A  PS +SG+I   TP++Y+ F  T   +   LL
Sbjct: 292 HLGTALGPS-LSGFIVQYTPHMYYVFYITSTFWIIYLL 328


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 311  DGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEY-VGPDSQTVENTIKFVAEDSDLETKT 487
            D E+AI + + +     N+ + K+I  + +   Y +GP+   ++NTIK     +D +T+T
Sbjct: 937  DVENAIKEISAIAEEVKNLVE-KVIKIDREYHRYLIGPNGSKLQNTIKECGGSTD-KTET 994

Query: 488  IKTI 499
             + I
Sbjct: 995  ARLI 998


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 371  DLKIILPETDNFEYVGPDSQTVENTIKFVAEDSDLET 481
            DL  I P T    Y+    QTV NT      D D++T
Sbjct: 954  DLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKT 990


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 38/144 (26%), Positives = 55/144 (38%)
 Frame = -3

Query: 708 TVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPNSSL*FLTSYLTGCQ 529
           TVS  +V S+T SSS S   +S    +        S  S  S S +SS    +S  +   
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185

Query: 528 LLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNILSSDP 349
               SS  +        S S S        S+   S  + S  S S +    S+ +++  
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMS 245

Query: 348 SITLHLKIASSPSSVSGWISYETP 277
           S T    +  +PSS S   S E P
Sbjct: 246 SSTFISTVTVTPSSSSSSTSSEVP 269


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 729 WIPKMINMLITYLTVSKTNSSXTTLI 806
           WI    N L+ YL ++K++S   TLI
Sbjct: 119 WIRDSANQLLPYLPLAKSDSPLATLI 144


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 678 TFSSSQSYWLTSKADLSNP 622
           TFS     W+ ++ADLSNP
Sbjct: 210 TFSDMFHGWMAARADLSNP 228


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 294 ISYETPYLYFAFSSTIILFTAPLL*STRDE*FVFHTE*SCTLPALIDIL 148
           I+ E+  LY+A+ + I +++  L   +  +   FHT  +   P ++DI+
Sbjct: 205 INDESSVLYWAYKNNIPIYSPALTDGSIGDMLYFHTYKATPRPLVLDIV 253


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -3

Query: 477 SKSLSSATNLIVFSTVCESGPTYSKL------SVSGKIIFKSNILSSDPSITLHLK--IA 322
           S S     +L+ FST     PTYS +      S S + + K NILS + S  + L    A
Sbjct: 86  SSSFDDHQSLLPFSTEVRRTPTYSVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEA 145

Query: 321 SSPSSVS 301
           S+ SS S
Sbjct: 146 SNKSSRS 152


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 182 YSVWKTNHSSRVDYNKGAVKSIIVDENAKY 271
           Y  +  N +SR  +NK     +++D+N +Y
Sbjct: 71  YKTYSPNLTSRASWNKHFFARLMLDDNVQY 100


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 620  TGFDKSAFDVSQYDCDDENVEEHTLQSETVTKFLMFMDPENDKHVDHVFNS 772
            TGF+ +++  +    DD NV++     E+V    MFMD  N   ++ V  S
Sbjct: 1011 TGFELTSYVNALSKKDDINVQKTENVDESVGLNAMFMDNVNQDSLNSVDQS 1061


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 239 KSIIVDENAKYRYGVSYEIH-PETDDGE 319
           KS+IVD +A YR+  S++   PE +D E
Sbjct: 663 KSVIVDLSADYRFEPSWQYGLPELNDRE 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,047
Number of Sequences: 5004
Number of extensions: 75198
Number of successful extensions: 253
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)