Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_G12
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 33 0.27
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 31 1.1
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 29 3.3
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 29 5.8
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 29 5.8
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 5.8
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 28 7.6
07_03_0460 + 18425464-18427473 28 7.6
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 28 7.6
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 28 7.6
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 7.6
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -2
Query: 538 WMPIIVFLVIGSPNSLYCLSLQIAIFSDELDSVFNGL*IWSDVFKVVGFWQDNL*VEYII 359
W ++ L +P S Y + +F +++S F G W V GF DN V Y++
Sbjct: 972 WTHQVMLLFESTPRSDYSNHMSYTVFHAQMES-FEGFFHWMVVLWERGFTHDNPQVRYLV 1030
Query: 358 FRSKHYITLEN 326
S IT E+
Sbjct: 1031 MHSFLDITWEH 1041
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 542 RYEVKNYNELLGLLEKHEIWDYFNFNTGFDKSAFDVSQYDCDDENVEEHTLQSETVTKFL 721
R +VKN ++L L H W Y +TG + D ++ +L +T T+ L
Sbjct: 233 RCQVKN--QILVLKTTHSFWRYLQAHTGLGR---------LPDGTIDAESLFWKTHTERL 281
Query: 722 MFMDPENDKHVDHVFNSF 775
+ PEN++ +D +F +
Sbjct: 282 QWGPPENEELLDQLFRGY 299
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +2
Query: 197 TNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPETDDGEDAIFKCNVMLGSEDNIFDL 376
++ SS D + K I + + + + + ++ D ED++ + L S N+FDL
Sbjct: 317 SSSSSSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLSS--NLFDL 374
Query: 377 KIILPE-TD-NFEYVGPDSQTVENTIKFVAEDSDLE 478
LPE TD N+ YV + + DSD++
Sbjct: 375 NEALPESTDLNYPYVSNPEEPNHEPRQHEPLDSDVQ 410
>02_01_0331 +
2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 641 FDVSQYDCDDENVEEHTLQSETVTKFLMFMDPEN 742
+++ QYDCD E + + LQ +V+ L F EN
Sbjct: 273 YEIVQYDCDTEIMHSYVLQEVSVSDQL-FQSSEN 305
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 197 TNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPETDDGEDAIFKCNVMLGSEDNIFDL 376
++ SS D + K I + + + + + ++ D ED++ + L S N+FDL
Sbjct: 317 SSSSSSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLSS--NLFDL 374
Query: 377 KIILPE-TD-NFEYVGPDSQTVENTIKFVAEDSDLE 478
LPE TD N+ YV + DSD++
Sbjct: 375 NEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQ 410
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 461 EDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNEL 571
ED+D+ + ++W + KN++WHP R + + E+
Sbjct: 476 EDADVSAAELCSLWEN-EIKNSDWHPFRVVMVDGKEM 511
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 741 FSGSMNMRNLVTVSLCNVCSSTFSSS 664
FSGS+ + N T+ L N+ S+TFS S
Sbjct: 308 FSGSVPVVNSTTLKLLNLSSNTFSGS 333
>07_03_0460 + 18425464-18427473
Length = 669
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 326 IFKCNVMLGSEDNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAED 466
IF C+ G E +FD+ I+ E N E++ + IKF E+
Sbjct: 299 IFACSSRKGDEHKLFDMDIVTNE--NMEFLQGIGRVALECIKFEVEE 343
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 581 LEKHEIWDYFNFNTGFDKSA 640
LEKHE WDY N G+ A
Sbjct: 388 LEKHEQWDYINETLGYSLMA 407
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 554 KNYNELLGLLEKHEIWDYFNFNTGFDKSAFDV-SQYDCDDENV 679
KN+NE+ + E E+W+ G +K D+ +Y+ + N+
Sbjct: 167 KNFNEITSIQEAKELWEKIQQRQGLNKWRPDLEEEYEDQEGNI 209
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 413 VGPDSQTVENTI-KFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVK 556
V PDS I K A D +TK IKT+ + +E N W P +E K
Sbjct: 148 VRPDSGVSRLVIEKLSAGAPDTQTK-IKTLTSIAEEHNIKWEPKAFEEK 195
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 503 ATYDEKNNNWHPVRYEVKNYNELLGLLEKHEIWDYFNFNTGFDKSAFDVSQYDCD--DEN 676
AT+D++N + + Y + G IWD N G D SA QYD D +EN
Sbjct: 532 ATFDQENTDNYYSNYSSSHGTFTHG---SSTIWDSQNDKAGPDSSAVVFDQYDSDVGEEN 588
Query: 677 V 679
+
Sbjct: 589 L 589
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,668,736
Number of Sequences: 37544
Number of extensions: 434017
Number of successful extensions: 1106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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