Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_G03
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    28   0.55 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   3.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.9  

>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  FSDLPQIIQAQN*PNRSSRSRVLARLTNSNSF 114
           +SD+PQ  Q    PN +  SR+   L+NS  F
Sbjct: 381 YSDIPQQFQCDYVPNVAKESRINVALSNSFGF 412


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 174 RFNCNTLKCHILFRILVELVFMIFLLYSFFLHFHEILL 287
           R+ C  L CH  + I+  L  M +LL  + L    +L+
Sbjct: 261 RYECLWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLI 298


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 225 ELVFMIFLLYSFFLHFHEILL 287
           E  F I   YS F HFH +LL
Sbjct: 201 ENTFFIARKYSDFSHFHHLLL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,285
Number of Sequences: 5004
Number of extensions: 15656
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)