Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_G02
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 33 0.035
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.0
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 5.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.3
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 7.0
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 7.0
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 25 9.3
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 9.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.3
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.3
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 33.5 bits (73), Expect = 0.035
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Frame = +3
Query: 258 TPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQP-MLIREAS--SIGSTSLLVAICSV 428
T +Y L I IK FS+ + I P ML+ +A S+G+ +V +
Sbjct: 18 TSFSLAAVYDAPLKKAIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77
Query: 429 VGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD 599
T ++ ++H+ K YV+E + T N KR+ ++ ++ + +PD
Sbjct: 78 T---TSLSTAIIHWAAKSYVSEATLKGNVLSLN--TFNILGKKRLSQYTLDKLKIPD 129
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 174 LTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEK 278
L E S S T+T NS R+YAIK+ ++ I EK
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRHIIKEK 139
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 147 NESKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKI 323
NE +VLA T + LKC + A++ K++ P GT+ +P+ K +K+
Sbjct: 430 NEQLNSVLAATNLATELKCEDINKLKQLRLALETKKDLP-GTKVQLKPAYSPEGKLLKL 487
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 508 PKLRHTKRLQLISLQQNEFMNS 573
PK+ H K L+LIS N F +S
Sbjct: 670 PKMSHLKHLELISSAANSFSDS 691
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Frame = +3
Query: 153 SKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSL 332
S + + L P ++ + T + + +KE G ++ + I + + +
Sbjct: 322 SLILIGLLVSPDDPRLMGNSSDGSTSPFVLAIKEANIRGLPSVFNAVII--ISTVSVANS 379
Query: 333 CTSIAGIAIQ--------PMLIREASSIGSTSLLVAICSVVGFFTFV 449
CT A + P +G L +A+C + GFF ++
Sbjct: 380 CTFTASRTLHAMAAKGDAPRFFAYTDRLGRPLLAMAVCLLFGFFAYI 426
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 674 WVIEESCFNEQRLAISMHSSEH 609
W++ SCFN R+A S++ E+
Sbjct: 513 WMLGNSCFNRARIAHSIYHWEY 534
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 380 SIKHRKYFFIGSHMFSGGILHVC 448
S K R +F +G H+ S G L+VC
Sbjct: 47 SSKQRSWF-VGDHVVSDGYLYVC 68
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +3
Query: 570 FKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIMGYDKPMDFKLGE 731
+K +D PDV T+H A + N H +G D + + +GE
Sbjct: 610 YKKKDALRPDVSEKVFTVHVRANKRLTPAEYNRNIFHIEFDLG-DSGLTYDIGE 662
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 782 RFTNIFNNLLXVFTFLRFS*FKIHWLIIA 696
RF NIF +L + + F ++WLI+A
Sbjct: 818 RFLNIFTDLSSTDFLHKVNVFAVYWLILA 846
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +3
Query: 180 EPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIA 356
EP + + + + ++ T ++ T + +Y G L P + +F L SI +A
Sbjct: 49 EPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVA 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,625
Number of Sequences: 5004
Number of extensions: 67997
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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