Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_G01
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 68 5e-13
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 68 5e-13
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 1.1
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 1.9
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 24 5.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 24 5.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 24 7.8
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 24 7.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.8
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 67.7 bits (158), Expect = 5e-13
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 56 PQLEFIGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 208
P + G+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 118 PSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
Score = 57.2 bits (132), Expect = 7e-10
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 GNFGFGIQEHIDLGIKYDPSIGIY 72
GNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 100 GNFGFGIQEHIDLGIKYDPSIGIY 123
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 67.7 bits (158), Expect = 5e-13
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 56 PQLEFIGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 208
P + G+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 118 PSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
Score = 57.2 bits (132), Expect = 7e-10
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 GNFGFGIQEHIDLGIKYDPSIGIY 72
GNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 100 GNFGFGIQEHIDLGIKYDPSIGIY 123
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 1.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 189 HFIASSFVRRWGNPTFPVL-RLLCATLKPGRPSTT*KSSPINS 64
++ ASSF R+ N T P+ ++ A+LKP P T+ SSP S
Sbjct: 131 NYSASSFERQ--NRTAPLQSKVTTASLKPNIPRTSMSSSPTAS 171
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -3
Query: 222 LSMIPSYFC-WNHFIASSFVRRW 157
LS I S+ W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 24.2 bits (50), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 9 WLRYSRTH*LGYQVRSLNWNLLDWTFTSYLA 101
W R SRT G S + +DW F + LA
Sbjct: 135 WTRTSRTFLCGMDGNSYSEVAVDWLFETLLA 165
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 24.2 bits (50), Expect = 5.9
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 7 FGFGIQEHIDLGIKYDPSIGI-YWTGLL 87
F + I + ++L ++ DPSIG+ +W+ ++
Sbjct: 798 FAYVISKCLNLFMQIDPSIGVAFWSSMV 825
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 147 TFPVLRLLCATLKPGRPSTT*KSSPINS 64
T P+L LC L G P+ T S+ + +
Sbjct: 63 TQPILNQLCKRLSTGNPNNTNASTVVTA 90
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.8 bits (49), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 195 WNHFIASSFVRRWGNPTFPVL 133
WN+ I S W P+FP++
Sbjct: 406 WNNLIDDSSPLLWREPSFPLI 426
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -2
Query: 178 IFLCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSNKFQLR 56
I +C + K+H + L+PS ++ K D ++ + K ++
Sbjct: 98 INICNSPSKNHETSLSPSKSTIDNNERKLDNEIDNYKHDVK 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,690
Number of Sequences: 5004
Number of extensions: 23650
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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