Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_G01
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    70   5e-13
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    69   7e-13
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    26   6.4  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +2

Query: 56  PQLEFIGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 211
           P +   G+DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKYDG
Sbjct: 128 PSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDG 179



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +1

Query: 1   GNFGFGIQEHIDLGIKYDPSIGIY 72
           GNFGFG+QEHIDLGIKYDPSIGIY
Sbjct: 110 GNFGFGVQEHIDLGIKYDPSIGIY 133


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = +2

Query: 56  PQLEFIGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 211
           P +   G+DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKYDG
Sbjct: 128 PGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179



 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +1

Query: 1   GNFGFGIQEHIDLGIKYDPSIGIY 72
           GNFGFG+QEHIDLGIKYDP IGIY
Sbjct: 110 GNFGFGVQEHIDLGIKYDPGIGIY 133


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  IQEHIDLGIKYDPSIGIYWTGLLRRTWPARFQR 117
           IQ H++L IK    IG Y  G+L     AR+QR
Sbjct: 520 IQHHLELYIKPQYRIGPYLIGILLGYQLARYQR 552


>Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical
           protein C44H9.8 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 61  IGIYWTGLLRRTWPARFQRSTQKA*DRKSGISPPPHKGRCYEVVPTE 201
           IGI +  L+   +  +F++ + K   R SG S PPH+G    ++P +
Sbjct: 260 IGIIFFVLITAVFLMKFEKRSCK---RNSGPSEPPHQGDGNRLLPAD 303


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 175 FLCEAVGKSHFSCLTP-SVC 119
           F C A+G  H  C TP SVC
Sbjct: 394 FQCTAIGSQHLCCPTPGSVC 413


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 222  LSMIPSYFCWNHFIASSFVR 163
            LS + ++  WNH I SSF++
Sbjct: 2159 LSSLDNFLSWNHPIVSSFIK 2178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,449,989
Number of Sequences: 27780
Number of extensions: 129343
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)