Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F23
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   5.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.1  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 409 LNKRDYDNVFRNYDIQSDKRV 471
           LN+RD+D +F +YD + + +V
Sbjct: 2   LNERDFDLIFDSYDFKHEGKV 22


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 570  DIILNVAHLFNYGTLYLLMNIIKSCNRVNSVQKFFQPVLTVINLEIKNNQY 722
            D+IL+V +L +   +  L+N  + C   N + K F   +  ++ + K + +
Sbjct: 1373 DVILSVCNLLSPFEVVCLLNRYQPCAGENPLPKSFSKAVEALSCKYKQSGF 1423


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 376 IENVKKLGFSTLNKRDYDNVFRNYDIQSD 462
           +ENV+ +   T N+R  DN ++ Y+ ++D
Sbjct: 195 LENVEMVQRKTKNERKEDNPYKPYEDEND 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,766
Number of Sequences: 5004
Number of extensions: 51446
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)