Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F16
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    25   5.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.6  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   5.6  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   7.4  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    24   9.8  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    24   9.8  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.8  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    24   9.8  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    24   9.8  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 281 WPTSNQQKNLNQKISFRNSFLEMNDLYI 364
           WPT++   N N  I ++N    +  LY+
Sbjct: 186 WPTTDADMNDNDDIGYQNLANSLGKLYV 213


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -1

Query: 282  HNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIIL 112
            +N  LL  + H    + +  NN  +  S I   FVLN+ F   L+T+C  LGN++ L
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNN--LKQSEI--WFVLND-FSLVLATICSCLGNLLNL 1637


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -1

Query: 297 WFEVGHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFF 160
           W E+       +  + RL+   L+    HI     S   VL EE++
Sbjct: 102 WIELWDLESRTWDLIQRLYSFRLSEQQGHIQSHAFSSRAVLEEEYY 147


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  SSSHAEARNXVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKEL-FIKNKHVTDIRV 204
           + +H    N +LSL K+W  +   I+   D      +C  + + L +IK K V++ ++
Sbjct: 417 NDNHETCVNDILSLGKSWILKNGGILSPSDCTYVSPECSLQGESLEWIKGKQVSNCKL 474


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 223 KGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFF 339
           + +  LK+     ++K +I        EPK KNF+ +FF
Sbjct: 19  ESKSSLKDVKPSLEEKSYITPGLVDDVEPKGKNFVVRFF 57


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 273 PLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQF 154
           PLL P V++   L  +     ++DSN+  ++  N+E F F
Sbjct: 331 PLLLPTVNKFASLGWS-----VDDSNLHEVYHANQEVFGF 365


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 91  RQIPYIVKDYDIPKSEAQCREKLK 162
           R +P ++ D + PK E    EKLK
Sbjct: 81  RLVPVVIIDNNTPKKEESNAEKLK 104


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 273 PLLFPYVHRLFQLHLTLNNQHIN 205
           PLLF Y + L+ ++ T + QH N
Sbjct: 398 PLLFDYPNSLYPVNNTSSEQHHN 420


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 297 WFEVGH--NVPLLFPYVHRLFQLHLTLNNQH 211
           W   GH     L FP  H+  QL L L NQ+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQN 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,534
Number of Sequences: 5004
Number of extensions: 36549
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)