Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F14
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.0  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   9.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    24   9.3  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   9.3  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +1

Query: 121 PNSLSHPAGVERGL----PSPALCPAGTMNPWRLFINLFRMKLKNSCYAR 258
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 85  IPXFWLAS*WPKPNSLSHPAGVERGLPSPALCPAGTM---NPWRLFINLFRMKLKNSCYA 255
           IP +W A    K ++   P+ +E+   S       ++      +LF+N    + KNS   
Sbjct: 18  IPYYWNAE--LKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDL 75

Query: 256 RSLKPTPPKQKHR 294
           R   P  PK K R
Sbjct: 76  RKQLPDRPKFKKR 88


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  ELPQPKMYKFTILFLXFGLLHNGRSPTHFHIQLGWKE 157
           E  +P  Y  T L+    L H+G    HF ++  W+E
Sbjct: 245 ENDRPDSYSSTQLYCVLCLDHSGTDLEHFELR-SWRE 280


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 159 AAIAGTVSCRNDESLASIYKLIQNEAEK 242
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 10  RPMISSCFEVTQRTTSAKNV 69
           RP +SSCF VT +  S + +
Sbjct: 212 RPQLSSCFLVTMKDDSIEGI 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,494
Number of Sequences: 5004
Number of extensions: 32810
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)