Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F14
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)                       29   2.3  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               27   5.3  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   5.3  
SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         27   9.3  

>SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)
          Length = 261

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  KELPQPKMYKFTILFLXFGLLHNGRSPTHFHIQLGWK 154
           +++ +P  Y+   +   +G    G+SPT  HIQ  W+
Sbjct: 178 RDIDEPSTYEKVRVHAEWGKNRAGQSPTEGHIQSNWR 214


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 118  KPNSLSHPAGV--ERGLPSPALCPAGTMNPWR 207
            KP     P G     G P P  CP G+ NP+R
Sbjct: 2015 KPYGTDCPNGTYCPEGTPIPVPCPKGSYNPYR 2046


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   GRPMISSCFEVTQRTTSAKNVQIHDSIP 90
           GRP+IS C   T++ +   +  I DS+P
Sbjct: 366 GRPVISGCNTSTEKISEFVDYHIKDSVP 393


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 157 GLPSPALCPAGTMNPW 204
           G  +P  CP GT NPW
Sbjct: 232 GSATPIPCPTGTFNPW 247


>SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 245 PAMPEALSRHHRNRNTDKMPFNH 313
           P + E L+ H R    D MPF+H
Sbjct: 2   PILEEGLALHQRQATKDLMPFHH 24


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 245 PAMPEALSRHHRNRNTDKMPFNH 313
           P + E L+ H R    D MPF+H
Sbjct: 212 PILEEGLALHQRQATKDLMPFHH 234


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 132  FTSSWGGKRAAIAGTVSCRNDESL 203
            + SS GG +A  + T +C NDES+
Sbjct: 1299 YKSSMGGGKAVKSDTRTCENDESV 1322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,365,962
Number of Sequences: 59808
Number of extensions: 239666
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)