Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F13
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     67   1e-11
SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    30   2.6  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 29   3.4  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
 Frame = +2

Query: 77  FGSTGVIGLNAVEAALKKGLXVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHEAVEGT 256
           FG TG  GL+ V+ AL +G  V    R P K+     D + +VKG++ + +S   + EG 
Sbjct: 13  FGGTGKTGLHVVQQALDRGHHVTVIARSPEKMTIK-NDNLVVVKGDIFDIESFSPSFEGK 71

Query: 257 DAVVITLGT--RNDLAPTSDLSEGTKNIIDAMRAKNVKTV-------SACLSAFLFYEQE 409
           DA++ T GT   +   PT++ SE  K I+  M+   V  +       +       F  + 
Sbjct: 72  DAILSTFGTAFHSIFNPTTEYSESMKGILQTMKKHGVNRLIVETSWGTEATPGGPFSLEW 131

Query: 410 KVPPIFVN-LNEDHKRMFQAL-KDSGLNWIAAFPPHFTDDPSR-----EMIIEVNPEKTP 568
            + P+ +N + +D   M   + K+ G+N+    P   T+DP       E  +  N   T 
Sbjct: 132 IIKPLLLNGMLKDMGVMEHMIEKEEGINYTIVRPAGLTNDPPNGKYKIEEGVYCNKTGTT 191

Query: 569 GRTIAKCDLGTFLVDALSEPKYYKAVIGICNV 664
            R I + D+   +++ L   +Y K  I I  +
Sbjct: 192 HR-IPRADVAACMLNCLDTDQYDKKGIAIATL 222


>SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 506 PHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTF 604
           P FT  P     I V P +TPG     CD+  F
Sbjct: 188 PLFTSQPKHVQNILVRPSRTPGPAFYICDINAF 220


>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 434 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTP 568
           + E ++R+ + LKD G+     F P  TD+   E ++EV  E+ P
Sbjct: 250 IQEKNERIKKILKDLGIEE-KVFEPTMTDEEVPERLLEVRDEEVP 293


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +2

Query: 374 ACLSAFLFYEQEKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDD 523
           A LS F  Y+  K+P    N NE    +F AL    L+WI  +P HF  D
Sbjct: 333 AGLSTFYAYKARKIPE---NFNEARGIVF-ALYILILSWIVYYPVHFALD 378


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 279  PRVMTTASVPSTASCTESGSRTFPLT 202
            PR +T+++V S+ S +++GS T PLT
Sbjct: 1342 PRPITSSTVTSSMSSSDAGSSTTPLT 1367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,451,396
Number of Sequences: 59808
Number of extensions: 489279
Number of successful extensions: 1291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)