Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F09
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...   256   3e-69
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...   210   2e-55
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    49   9e-07
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    33   0.060
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.3  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   3.0  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   3.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score =  256 bits (627), Expect = 3e-69
 Identities = 113/193 (58%), Positives = 144/193 (74%)
 Frame = +2

Query: 197 QQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRA 376
           ++ E+RDG+RFTWNV+PS+RIE++R +VP+A +Y+PL ERPDLPP+ YEPV C +  C+A
Sbjct: 4   EEIEERDGVRFTWNVFPSTRIESSRTIVPIASIYKPLNERPDLPPVLYEPVTC-KAPCKA 62

Query: 377 ILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAMP 556
           +LNP C +D RAK W+C FC QRN  PPQY  IS    P EL+P +STIEYT+ R   + 
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIELLPEYSTIEYTLPRPPQLT 122

Query: 557 PIYLLVVDTCLDEEELGALKDSLQTSLSLMPQNALVGLITFGKMVQIHELGTEGISKCYV 736
           P++L VVD C DEE L ALKDSL  SLSL+P   LVGL+TFG MV ++ELG    SK YV
Sbjct: 123 PVFLFVVDVCQDEENLQALKDSLIISLSLLPPECLVGLVTFGTMVDVYELGYTECSKSYV 182

Query: 737 FKGTKDLSXKQIQ 775
           F+G+KD + KQIQ
Sbjct: 183 FRGSKDYTSKQIQ 195


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score =  210 bits (513), Expect = 2e-55
 Identities = 92/190 (48%), Positives = 130/190 (68%)
 Frame = +2

Query: 206 EDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILN 385
           ED+DGIR +WN + ++  E  R V+P+A +Y PL E   +   QY+PV C R  CRA+LN
Sbjct: 7   EDQDGIRLSWNTFSATPAENARAVIPIAAMYTPLHENERMTIEQYDPVAC-RAPCRAVLN 65

Query: 386 PMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAMPPIY 565
           P C VD RA+ W+C FCFQRNP P QY+ IS    P EL+   +T+EY +++    PP++
Sbjct: 66  PYCHVDLRARFWICPFCFQRNPLPAQYSDISSNSLPLELLSQSTTMEYVLSKPVKSPPVF 125

Query: 566 LLVVDTCLDEEELGALKDSLQTSLSLMPQNALVGLITFGKMVQIHELGTEGISKCYVFKG 745
           L V+DT +DE EL ALKD++  SLSL+P +A+VGLIT+G ++Q+HE+G E + K YVF+ 
Sbjct: 126 LFVMDTAVDESELTALKDAVIVSLSLLPPDAIVGLITYGSLIQVHEIGFEAMPKSYVFQP 185

Query: 746 TKDLSXKQIQ 775
             D S  ++Q
Sbjct: 186 AADYSTMKLQ 195


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 24/203 (11%)
 Frame = +2

Query: 170 DMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKE-RPDLPPIQY-- 340
           D   YE   Q N     ++FT    P++        +PL  + QP  E RPD  P+    
Sbjct: 151 DFVGYE---QGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPVVD 207

Query: 341 ----EPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQ--YAAISEQHQPAEL 502
                P  C +  CR  +NP  Q    +  W CN C   N F        +  QH   E 
Sbjct: 208 NTNSNPPRCKK--CRGYINPFIQFTMASSKWTCNLCGSENSFNDDGFNPLVGSQHDGVES 265

Query: 503 IP--NFSTI------EYTITRAQAMPPIYLLVVDTCLDEEELG-------ALKDSLQTSL 637
            P  N  TI      +Y I      P  ++ ++D   +    G       A+++ L   +
Sbjct: 266 RPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILYGPV 325

Query: 638 SLMPQNALVGLITFGKMVQIHEL 706
            L P N  + ++ F + V    L
Sbjct: 326 PLDP-NVKIAIVCFDRSVNFFNL 347


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = +2

Query: 221 IRFTWNVWPSSRIEATRLVVPLACLYQP---LKERPDLPPIQYEPVLCTRNTCRAILNPM 391
           +R T N  P++     +  +P A + +P   L E  D  P+  + ++     CR  +NP 
Sbjct: 207 VRSTINCVPTTNSLLKKSKIPFALVIRPYTSLVEEDDPVPVVTDTIISRCRRCRMYINPF 266

Query: 392 CQVDYRAKLWVCNFCFQRNPFPPQY 466
                    + CN C   N  P  Y
Sbjct: 267 SIFIDNGHRYRCNSCGIVNEVPQSY 291


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 449 PFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAMPPIYLLVVDTCLDEEELGALKDSLQ 628
           P+ P Y ++S Q  P+ +      + YTI R +A+P    +    C     + A   ++ 
Sbjct: 2   PYNPLYESLSNQFDPSRIETVLDPMGYTIKR-RALPVSLTIAGSDCSGGAGIQADLKTM- 59

Query: 629 TSLSLMPQNALVGLI 673
           TSL +   +A+  L+
Sbjct: 60  TSLGVYGMSAITCLV 74


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 620 SLQTSLSLMPQNALVGLITFGKMVQIHEL 706
           SL T++SL+  + LVG +  GK+  +H L
Sbjct: 286 SLLTNISLIKADDLVGALVDGKLPNLHRL 314


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 434 CFQRNPFPPQYAAISEQ-HQPAELIPNFS--TIE-YTITRAQAMPPIYLLVVDTCLDEEE 601
           C     F   Y  +  Q    + + PNFS  T+  YT+  ++++  +YL++ D  L  E+
Sbjct: 154 CAALRKFVMDYVVLIMQCENQSRIDPNFSLQTLRLYTLPTSRSLRQVYLILRDLLLSMEK 213

Query: 602 LGALKDSLQTS 634
             +  D L  S
Sbjct: 214 NASSSDDLGLS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,533
Number of Sequences: 5004
Number of extensions: 76578
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)