Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F09
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58563| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)                       30   1.8  
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_22861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)                     29   5.5  

>SB_58563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 689 VQIHELGTEGISKCYVFKGTKDLSXKQIQ 775
           V +HELG +G SK YVF+GTKDL+ KQIQ
Sbjct: 1   VHVHELGCDGCSKSYVFRGTKDLTAKQIQ 29


>SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 287 ACL--YQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDY--RAKLWVCNFCFQRNPF 454
           ACL  Y   +++P  PP +   +L   + C  +LNP C   +  R+ L +C   F  N  
Sbjct: 40  ACLKGYLQFQDQPSPPPRKQYQILQGPHVCGGLLNPSCCPGWQQRSSLGLCVVHFMDNYS 99

Query: 455 PPQ 463
            P+
Sbjct: 100 DPK 102


>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +2

Query: 332 IQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPN 511
           +Q+ P     + C    +P         +    +  Q +P+  Q++  + QH P    P 
Sbjct: 113 VQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQHSPYTVQHSPYTAQPI 172

Query: 512 FSTIEYTITRAQAMPPIY 565
           +ST ++  + AQ   PIY
Sbjct: 173 YSTAQFIYSTAQ---PIY 187


>SB_22861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/84 (32%), Positives = 38/84 (45%)
 Frame = -2

Query: 402 STWHIGFNIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLDGHTFQVNR 223
           ST+  GF  A   + V +TGS C    S  SL G       T +    I ++GH F + R
Sbjct: 4   STFQHGFETAPRTWPVINTGSVC---TSAFSLHGACYGPVSTYNREHKI-INGH-FGITR 58

Query: 222 MPSRSSFCWMNSSYVAISPIKKSC 151
            P R    W+       SP+++SC
Sbjct: 59  APCRFP-SWLFLVTTTTSPLRESC 81


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 161  LIGDMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKE 313
            ++ D+AT EE  +  E RDG  F ++++     +    +  LA L  PL++
Sbjct: 3296 MVADIATEEEACKDQETRDGDEFDFDLYNEGTDQEVANLCRLAELRSPLQQ 3346


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
 Frame = -2

Query: 336 CIGGRSGRSLSGWYKQAKGTTSLVASILLDGHTFQVNRMPSRSSFCWMNSSYV-AISPIK 160
           C+G ++ R LSG      G  +L+AS      T ++N   SR+S   +   +  + S + 
Sbjct: 287 CVGNKTSRRLSGGESMKGGRVTLIAS----RKTVKLNPQKSRASIKEIEGEHARSNSVVS 342

Query: 159 KSCGEPVINT*ANFLNHNMSSFRNPINF-SIF*KPSRRERLADLAVVNTIIGRP 1
               +   NT    + H  S    P+N+ SI    S R R+ D+A  N +  +P
Sbjct: 343 LDVPQETCNT--ALVTHGSS----PLNWKSIRPIVSHRMRITDVA-FNAVSSKP 389


>SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)
          Length = 1041

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +2

Query: 200 QNEDRDGIRFTWNVWPSSRIEATR-----LVVPLACLYQPLKER--PDLPPIQYEPV 349
           +N+D  G+ F+W   P   +  TR     L+VP+  L    +ER  P   PI   P+
Sbjct: 549 RNDDHGGVHFSWFAPPKGVVVGTRGGRGVLLVPMIALDSTNQERGSPSYFPIALSPL 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,966,928
Number of Sequences: 59808
Number of extensions: 576547
Number of successful extensions: 1235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)