Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_F06
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 343 2e-95
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 149 5e-37
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 123 3e-29
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 117 2e-27
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 109 6e-25
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 100 5e-22
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 77 4e-15
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 73 5e-14
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 73 6e-14
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 69 1e-12
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 64 3e-11
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 62 1e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 59 8e-10
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 58 1e-09
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 54 3e-08
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 53 5e-08
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 52 1e-07
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 50 5e-07
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 49 7e-07
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 40 3e-04
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 38 0.002
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.25
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.58
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 2.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.1
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 3.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 7.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 7.2
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 7.2
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.5
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 343 bits (842), Expect = 2e-95
Identities = 157/212 (74%), Positives = 192/212 (90%), Gaps = 1/212 (0%)
Frame = +1
Query: 172 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 348
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 349 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 528
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 529 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVEL 708
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KAP E+YADIGGL++QIQEIKE+VEL
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
Query: 709 PLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
PLTHPE YE MGI PPKGVILYG PGTGKTLL
Sbjct: 210 PLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 241
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 149 bits (361), Expect = 5e-37
Identities = 72/171 (42%), Positives = 112/171 (65%)
Frame = +1
Query: 292 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 471
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 472 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 651
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ P +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 652 ADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
AD+GGLD Q QE++E+VELPLT + Y +GI PP+GV+LYGPPGTGKT+L
Sbjct: 134 ADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTML 184
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 123 bits (297), Expect = 3e-29
Identities = 63/174 (36%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Frame = +1
Query: 295 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 462
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 463 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 642
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK P
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 643 ETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
TY +GGL+ QI+EIKE +ELP+ HPE +E +GI PKG++LYGPPGTGKTLL
Sbjct: 142 STYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLL 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 117 bits (282), Expect = 2e-27
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 4/175 (2%)
Frame = +1
Query: 292 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 459
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 460 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 639
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 640 QETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
++A +GGL+ QI+E++E +ELPL +PE + +GI PPKGV+LYGPPGTGKTLL
Sbjct: 128 DISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 109 bits (261), Expect = 6e-25
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 21/187 (11%)
Frame = +1
Query: 307 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 450
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 451 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 603
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 604 PMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPP 783
V M++++ P E Y+DIGGL QI+E+ E++ LP+ + + +G+ PPKG +++GPP
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPP 228
Query: 784 GTGKTLL 804
GTGKTLL
Sbjct: 229 GTGKTLL 235
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 99.5 bits (237), Expect = 5e-22
Identities = 48/122 (39%), Positives = 73/122 (59%)
Frame = +1
Query: 436 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 615
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 616 VMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGK 795
+M++E+ P TY D+GG QI+ ++E VELPL PE + +GI PPKG++LYGPPGTGK
Sbjct: 167 MMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGK 226
Query: 796 TL 801
TL
Sbjct: 227 TL 228
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 76.6 bits (180), Expect = 4e-15
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = +1
Query: 649 YADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
Y DIGG Q+ +I+E VELPL HP+ ++ +GI PP+G+++YGPPGTGKTL+
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLM 274
Score = 65.7 bits (153), Expect = 7e-12
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Frame = +1
Query: 430 NLEEIIDDNHAIVSTSVGS-------EHYVSILSFVDKDQLEPGCSVL--LNHKVHAVVG 582
+LE+I + H V + + S + + +D D+ E VL L +
Sbjct: 415 DLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRF 474
Query: 583 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKG 762
LG ++P + + P + DIGGL+ +E++E+V++P+ + E + G+ P KG
Sbjct: 475 ALGS-SNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKG 533
Query: 763 VILYGPPGTGKTLL 804
V+ +GPPGTGKTLL
Sbjct: 534 VLFFGPPGTGKTLL 547
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 72.9 bits (171), Expect = 5e-14
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +1
Query: 646 TYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
T++ IGGL QI +I++ VELP +PE ++ I PP+GV+LYGPPGTGKT++
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMV 329
Score = 72.1 bits (169), Expect = 8e-14
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 631 KAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTL 801
++P ++DIGG + Q++KESVE PLTH E + +G+ PPKGV+LYGPPG KT+
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTI 597
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 72.5 bits (170), Expect = 6e-14
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +1
Query: 652 ADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
+DIGGLD I E+ E V +P+ HPE Y+ GI PP+GV+L+GPPG GKT+L
Sbjct: 174 SDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTML 224
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +1
Query: 637 PQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
P ++ +IG L + E++ ++ P+ PE Y+ +GI P GV+L+GPPG GKTLL
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLL 542
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 68.5 bits (160), Expect = 1e-12
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +1
Query: 646 TYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
++ +GGLD I ++KE V LPL +PE ++ + PP+GV+ +GPPGTGKTL+
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLM 316
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 63.7 bits (148), Expect = 3e-11
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 11/219 (5%)
Frame = +1
Query: 181 PIPTRVGKKKRKAKGP----DAALKLPQVTPHTRC-------RLKLLKLERIKDYLLMEE 327
PIP+R G++KRK +GP L++ + R R KL + +Y L +
Sbjct: 208 PIPSRRGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNRPNYHLF-D 266
Query: 328 EFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSIL 507
+ P KI K+ + +G + D + +S SE +
Sbjct: 267 YYNEIASSPNPSTTKITYNPPKLPMKDFATLPIG-YQSTCDSDETSELSSTSSEQTSDVE 325
Query: 508 SFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQE 687
+ L G S + + + + D + S + IGGL+ I +
Sbjct: 326 GLNAYNNL--GASSDIENAPSSQLHFGHIDEKTIRSTDPFANRENLDFNSIGGLEDIILQ 383
Query: 688 IKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
+KE V LPL +PE + + I PP+GV+ +GPPGTGKTL+
Sbjct: 384 LKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLM 422
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Frame = +1
Query: 595 DTDPMVSVMKLEKA------PQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPP 756
D D ++ ++ EK+ P+ + DIGGL+ ++++++LPL PE + G+ P
Sbjct: 630 DVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFS-QGLKPR 688
Query: 757 KGVILYGPPGTGKTLL 804
GV+LYGPPGTGKTLL
Sbjct: 689 SGVLLYGPPGTGKTLL 704
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 58.8 bits (136), Expect = 8e-10
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +1
Query: 649 YADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
+AD+ G+D +EI E V+ L +P++YE +G P+G IL GPPGTGKTLL
Sbjct: 295 FADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLL 345
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = +1
Query: 646 TYADIGGLDTQIQEIKESVELPLTHPEYYEXMG--IXPPKGVILYGPPGTGKTLL 804
++ DIGG+D + ++ + V PL +PE ++ G + PKG++LYGPPG GKT+L
Sbjct: 87 SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTML 141
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +1
Query: 607 MVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPG 786
+ S + +EK P + DI GL+ + +KE+V LP+ P+ + G P G++LYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 787 TGKTLL 804
TGK+ L
Sbjct: 173 TGKSYL 178
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 52.8 bits (121), Expect = 5e-08
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +1
Query: 649 YADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
++DI GLD +KE+V P PE ++ + P +G++L+GPPGTGKT+L
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTML 428
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 628 EKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
E+A ++D+ G+D +E++E V+ L P ++ +G P+GV+L GPPGTGKT+L
Sbjct: 259 ERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTML 316
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 49.6 bits (113), Expect = 5e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +1
Query: 655 DIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
DI GL+ +KE+V P P+ ++ + P +G++L+GPPGTGKT+L
Sbjct: 460 DISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTML 508
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 658 IGGLDTQIQEI-KESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
IGGLD++ I + + L P E +GI KG++LYGPPGTGKTL+
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLI 320
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 649 YADIGGLDTQIQEIKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKTLL 804
+ DI G+ + +++ +E P+ + Y+ + P G++L+G PG GKT L
Sbjct: 605 WIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYL 656
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 667 LDTQIQE-IKESVELPLTHPEYYEXMGIXPPKGVILYGPPGTGKT 798
L++ +++ I + V L + ++Y+ GI +G +LYGPPG+GKT
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKT 256
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 274 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 453
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 259 PHTRCRLKLLKLERIKDYLLM 321
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 754 PKGVILYGPPGTGKTLL 804
PKG+ LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 322 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 420
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 751 PPKGVILYGPPGTGKTLL 804
PP V + GPPGTGK+ L
Sbjct: 73 PPVIVAVMGPPGTGKSTL 90
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 763 VILYGPPGTGKT 798
++ YGPPGTGKT
Sbjct: 59 MLFYGPPGTGKT 70
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 343 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 519
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 520 KDQLEPGCS 546
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 742 GIXPPKGVILYGPPGTGKT 798
G+ K V+L GPPG GKT
Sbjct: 405 GLGLYKAVLLSGPPGIGKT 423
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 189 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 365
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 366 RE 371
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 289 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 459
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 460 AI 465
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 244 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 423
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 280 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 396
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +1
Query: 766 ILYGPPGTGKT 798
+++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = -2
Query: 800 SVLPVPGGPYKMTPLGGXIPIXS*YSGCVRGNSTDSLISWIWVSRPPMSA*VSCGAFSSF 621
S+ P G TP+ +P S S + T S S S P + SC +S
Sbjct: 177 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPLPTTSTSCTTSTSI 235
Query: 620 MTDTMGSVSSPKTPTTACT 564
T S+S+P TPT T
Sbjct: 236 PTGGSSSLSTPITPTVPPT 254
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 583 VLGDDTDPMVS-VMKLEKAPQETYADIGGLDTQIQEIKESV 702
VL D D + + +LEK ++ A + L T+I E+K +
Sbjct: 1278 VLRKDNDAKLGKIQELEKEVEKLNASLNPLQTEINELKAEI 1318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,801
Number of Sequences: 5004
Number of extensions: 60246
Number of successful extensions: 240
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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