Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F05
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...   119   6e-28
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   4.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   4.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   5.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.1  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score =  119 bits (286), Expect = 6e-28
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
 Frame = +3

Query: 210 PGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKE 389
           PG+L++    + +K+    +   +  ++I    + +F   + L++ LK+       GF +
Sbjct: 19  PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78

Query: 390 GEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQC 569
            + + +    K N++  + +KE S+KGWNWG A F G+ L F+V +  AFEIP+  V+  
Sbjct: 79  EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138

Query: 570 N-TGKNEVTLEFHQNDDTPV------SLMEMRFHIPTSEVANDL--------DAVEAFHQ 704
           N +GKNEV LEF   DD  +       L+EMR ++P +    D         +A   F++
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198

Query: 705 QVMNKASVISVSGDAIAIFRELXCLTPRGR 794
            +  +A +   +GDAI  F E+  LTPRGR
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGR 228


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 64  ISHCVLXCVTKNFSFTSFQVF 2
           +SHCVL C   N+S+T   +F
Sbjct: 150 LSHCVLRCCLSNWSWTHRAMF 170


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -1

Query: 398 LLTFFKTSVSVQSTIFEKQT*APRTNELLEIHQLNVIS*YLFNFAGFTILENYVLVC 228
           LL+ F++S   +    +++  AP++   L+   + V+S +L + AGF I+E Y+L C
Sbjct: 279 LLSSFRSSFE-RDRRRQQEFLAPKSLTTLD---MAVVSEWLNSIAGFMIVEYYILQC 331


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 317 LLEIHQLNVIS*Y--LFNFAGFTILENYVLVCHF*PPWYHVSFYFCGNIVIL 168
           LL + + N++  +  LF FA F  L+ Y+L       +  V F FC +I+IL
Sbjct: 546 LLSVMKSNILRLFYVLFLFACFYGLD-YILCAELLQAFLRVVFTFCEHIIIL 596


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 231 LSFLTSLVPCFLLFLRKHRYTLKTP 157
           LSF+  L PCF LFL  + ++L +P
Sbjct: 192 LSFI--LFPCFSLFLSSNSFSLASP 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,476
Number of Sequences: 5004
Number of extensions: 71265
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)