Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F05
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...   128   5e-30
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...   107   1e-23
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151...    33   0.20 
03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309...    28   7.4  

>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score =  128 bits (309), Expect = 5e-30
 Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 9/217 (4%)
 Frame = +3

Query: 171 YNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFL 350
           +N++S   +G   PG+ K+    + +K    GK  ++  +DI  V +     S+ L +  
Sbjct: 7   FNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVST 66

Query: 351 KNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTN 530
           K G  +R+ GF+E +   +  F + N      EK+LS+ G NWG  + NG +LSFNVG+ 
Sbjct: 67  KEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSK 126

Query: 531 TAFEIPLHYVSQCN-TGKNEVTLEFHQNDDT----PVSLMEMRFHIPTSEVA----NDLD 683
            AFE+ L  V+Q    GK +V LEFH +D T      SLM++ FH+PTS        +  
Sbjct: 127 EAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRP 186

Query: 684 AVEAFHQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
           + +   Q ++NKA V S S +A+  F  +  LTPRGR
Sbjct: 187 SAQVLWQAILNKADVGS-SEEAVVTFDGIAILTPRGR 222


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score =  107 bits (257), Expect = 1e-23
 Identities = 70/210 (33%), Positives = 107/210 (50%), Gaps = 15/210 (7%)
 Frame = +3

Query: 210 PGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKE 389
           PG+ K+    + +K    GK  +I  +D+  V + K   ++ L +  K+G  +++ GF+E
Sbjct: 57  PGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFRE 116

Query: 390 GEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFN------GAVLSFNVGTNTAFEIPL 551
            +   +  F + N      EK+LS+ G NWG    N      G +L+F VG+  AFE+ L
Sbjct: 117 QDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINVTLSIVGNMLTFMVGSKQAFEVSL 176

Query: 552 HYVSQCN-TGKNEVTLEFHQNDDT----PVSLMEMRFHIPTSEVA----NDLDAVEAFHQ 704
             VSQ    GK +V LEFH +D T      SLM++ FH+PTS        +  A +   +
Sbjct: 177 ADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFLGDENRTAAQVLWE 236

Query: 705 QVMNKASVISVSGDAIAIFRELXCLTPRGR 794
            +M  A V S S +A+  F  +  LTPRGR
Sbjct: 237 TIMGVADVDS-SEEAVVTFEGIAILTPRGR 265


>08_01_0001 -
           14186-14288,14473-14590,14671-14727,14943-15010,
           15104-15144,15405-15461,15980-16041,16833-16929,
           17016-17102,17171-17263,17394-17452,17653-17716
          Length = 301

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 LSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQ 566
           +SL+ +  GTA F G    F VG N +  I LHY+ +
Sbjct: 137 VSLQNFPVGTAAFLGTTKGFRVGLNLSLAIALHYIPE 173


>03_01_0399 +
           3097878-3098141,3098254-3098547,3098659-3098886,
           3099148-3099224,3099501-3099540,3099737-3099802,
           3100305-3100706,3100777-3100888,3101445-3101530,
           3101607-3101672
          Length = 544

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
 Frame = +3

Query: 375 GGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKF---NGAVLSFNVGTNTAFEI 545
           G   + E+EK+ + FK  Y K ++  ++  +G++             + F       +E+
Sbjct: 421 GSLDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEV 480

Query: 546 PLHYVSQCNT-GKNEVTLEF--HQNDDTPVSLMEMRFHIPTSEVAN 674
            LH + +    G+          + D+T +  +E  F     EV N
Sbjct: 481 YLHRIGRAGRFGRKGAVFNLLCGETDNTVMRKIETYFQHNVPEVRN 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,231
Number of Sequences: 37544
Number of extensions: 399826
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)