Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F05
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                    216   2e-56
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)                       34   0.15 
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   29   4.3  
SB_17518| Best HMM Match : F5_F8_type_C (HMM E-Value=1e-29)            29   4.3  
SB_22748| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  

>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score =  216 bits (527), Expect = 2e-56
 Identities = 104/213 (48%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
 Frame = +3

Query: 159 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGL 338
           E LEYN+VS  ++G +  GRLK+     +FK SKTG+V+Q S +DIE  ++ +      L
Sbjct: 4   EGLEYNEVSLLVRGALNSGRLKLHKSGAVFKASKTGRVDQFSKDDIESAHWLRVACGQEL 63

Query: 339 RLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFN 518
           ++ LK+G   R+ GFKE +   +++F K+ +   + E ELS+KGWNWGTA FNG+ L+F 
Sbjct: 64  KIVLKSGLQFRFDGFKESDFANLSEFLKSFFGVKLEEMELSVKGWNWGTATFNGSALAFE 123

Query: 519 VGTNTAFEIPLHYVSQCNT-GKNEVTLEFHQNDDTPVSLMEMRFHIPTSEVANDLDAVEA 695
           V    AFEIPL  VSQ  T G NEVTLEFHQ+DD  V+LMEMRF+IPT   + D + V  
Sbjct: 124 VDKKPAFEIPLKDVSQATTAGNNEVTLEFHQHDDAEVALMEMRFYIPTPADSTDPNPVTT 183

Query: 696 FHQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
           FH+ V++KA +I ++GDAI    ++ CLTPRGR
Sbjct: 184 FHEHVLSKADIIQITGDAIVTIPDVACLTPRGR 216


>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
          Length = 540

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 441 MLEKELSLKGWNWGTAK-FNGAVLSFNVGTNTAFEIPLHY-VSQCNTGKNEVTLEFHQND 614
           + E E++L   + G  K  NG +L  + GTN      L   + Q  T  +++ LE H ++
Sbjct: 283 LFEDEITLDNMSRGQLKAINGLLLLPSYGTNNYLRFQLQMKLRQLRT--DDLWLELHLDE 340

Query: 615 DTPVSLMEMRFHIPTSEVANDLDAVE 692
           + P+SL+ M   +   E  +++D ++
Sbjct: 341 EVPISLLLMSRALYLPETVSNVDKLK 366


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 307  ISRSSLVRGAYVCFSKMVLCTDTEVLKKVSKR 402
            +S   +V+ +YV  S M LC+D ++ KK S+R
Sbjct: 1044 VSPRPIVKDSYVRCSDMHLCSDKDIEKKKSRR 1075


>SB_17518| Best HMM Match : F5_F8_type_C (HMM E-Value=1e-29)
          Length = 213

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 384 KEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNT 533
           + G+  ++ K F  +Y  D      SL G NW + K NGAV  F   +N+
Sbjct: 128 RAGDPSQITKQFVTSYGLDY-----SLDGTNWESYKENGAVKIFPGNSNS 172


>SB_22748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 624 VSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
           VSLMEM          +++      HQ   N+ ++ S++   +  FRE   +   GR
Sbjct: 19  VSLMEMYLEDDNEAPYSNVHMKARLHQHFGNEIAINSINNQNVVTFRETTAMQKYGR 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,685,605
Number of Sequences: 59808
Number of extensions: 497149
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)