Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_F05
(794 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box p... 258 2e-68
BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein. 258 2e-68
BC005116-1|AAH05116.1| 709|Homo sapiens structure specific reco... 258 2e-68
AB209132-1|BAD92369.1| 547|Homo sapiens structure specific reco... 129 1e-29
Z97634-8|CAI95598.1| 771|Homo sapiens transmembrane protein 8 (... 30 8.4
Z97634-7|CAI95597.1| 238|Homo sapiens transmembrane protein 8 (... 30 8.4
BC021557-1|AAH21557.1| 771|Homo sapiens transmembrane protein 8... 30 8.4
BC004276-1|AAH04276.1| 155|Homo sapiens Unknown (protein for IM... 30 8.4
AE006463-7|AAK61227.1| 771|Homo sapiens M83 protein. 30 8.4
AB045292-1|BAB16376.1| 771|Homo sapiens M83 protein protein. 30 8.4
>M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box
protein.
Length = 709
Score = 258 bits (632), Expect = 2e-68
Identities = 120/212 (56%), Positives = 158/212 (74%)
Frame = +3
Query: 159 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGL 338
E LE+NDV E+KG+M GRL+++ Q IIFKNSKTGKV+ I A ++ +++ GL
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGL 62
Query: 339 RLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFN 518
+L KNG +++Y GF+E E EK++ FFK +Y +++EK+L +KGWNWGT KF G +LSF+
Sbjct: 63 KLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFD 122
Query: 519 VGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTSEVANDLDAVEAF 698
+G FEIPL VSQC TGKNEVTLEFHQNDD VSLME+RF++P ++ + +D VEAF
Sbjct: 123 IGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAF 181
Query: 699 HQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
Q V++KA VI +GDAI IFREL CLTPRGR
Sbjct: 182 AQNVLSKADVIQATGDAICIFRELQCLTPRGR 213
>BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein.
Length = 633
Score = 258 bits (632), Expect = 2e-68
Identities = 120/212 (56%), Positives = 158/212 (74%)
Frame = +3
Query: 159 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGL 338
E LE+NDV E+KG+M GRL+++ Q IIFKNSKTGKV+ I A ++ +++ GL
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGL 62
Query: 339 RLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFN 518
+L KNG +++Y GF+E E EK++ FFK +Y +++EK+L +KGWNWGT KF G +LSF+
Sbjct: 63 KLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFD 122
Query: 519 VGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTSEVANDLDAVEAF 698
+G FEIPL VSQC TGKNEVTLEFHQNDD VSLME+RF++P ++ + +D VEAF
Sbjct: 123 IGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAF 181
Query: 699 HQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
Q V++KA VI +GDAI IFREL CLTPRGR
Sbjct: 182 AQNVLSKADVIQATGDAICIFRELQCLTPRGR 213
>BC005116-1|AAH05116.1| 709|Homo sapiens structure specific
recognition protein 1 protein.
Length = 709
Score = 258 bits (632), Expect = 2e-68
Identities = 120/212 (56%), Positives = 158/212 (74%)
Frame = +3
Query: 159 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGL 338
E LE+NDV E+KG+M GRL+++ Q IIFKNSKTGKV+ I A ++ +++ GL
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGL 62
Query: 339 RLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFN 518
+L KNG +++Y GF+E E EK++ FFK +Y +++EK+L +KGWNWGT KF G +LSF+
Sbjct: 63 KLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFD 122
Query: 519 VGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTSEVANDLDAVEAF 698
+G FEIPL VSQC TGKNEVTLEFHQNDD VSLME+RF++P ++ + +D VEAF
Sbjct: 123 IGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAF 181
Query: 699 HQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
Q V++KA VI +GDAI IFREL CLTPRGR
Sbjct: 182 AQNVLSKADVIQATGDAICIFRELQCLTPRGR 213
>AB209132-1|BAD92369.1| 547|Homo sapiens structure specific
recognition protein 1 variant protein.
Length = 547
Score = 129 bits (311), Expect = 1e-29
Identities = 57/114 (50%), Positives = 82/114 (71%)
Frame = +3
Query: 159 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGL 338
E LE+NDV E+KG+M GRL+++ Q IIFKNSKTGKV+ I A ++ +++ GL
Sbjct: 207 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGL 266
Query: 339 RLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNG 500
+L KNG +++Y GF+E E EK++ FFK +Y +++EK+L +KGWNWGT KF G
Sbjct: 267 KLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGG 320
Score = 88.2 bits (209), Expect = 3e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +3
Query: 477 WGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIP 656
W + G +LSF++G FEIPL VSQC TGKNEVTLEFHQNDD VSLME+RF++P
Sbjct: 408 WISPFLTGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVP 467
Query: 657 TSEVANDLDAVE 692
++ + +D VE
Sbjct: 468 PTQ-EDGVDPVE 478
>Z97634-8|CAI95598.1| 771|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 771
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>Z97634-7|CAI95597.1| 238|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 238
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 189 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 232
>BC021557-1|AAH21557.1| 771|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 771
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>BC004276-1|AAH04276.1| 155|Homo sapiens Unknown (protein for
IMAGE:3615480) protein.
Length = 155
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 106 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 149
>AE006463-7|AAK61227.1| 771|Homo sapiens M83 protein.
Length = 771
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>AB045292-1|BAB16376.1| 771|Homo sapiens M83 protein protein.
Length = 771
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 726 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 601
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,700,709
Number of Sequences: 237096
Number of extensions: 2329934
Number of successful extensions: 8637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8634
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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