Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F05
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...   165   2e-41
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...   151   6e-37
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    29   5.1  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score =  165 bits (402), Expect = 2e-41
 Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 1/214 (0%)
 Frame = +3

Query: 156 MEFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWG 335
           M  L++  V  E  G++  G LK+T++++ FK  K GK   ++ +DI+ + +QK     G
Sbjct: 1   MAELQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPG 60

Query: 336 LRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSF 515
           LR+ L +G  HR+GGFK+ + EK+  F  +N+++ + +  L +KGWN+G A+  G  + F
Sbjct: 61  LRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEF 120

Query: 516 NVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTS-EVANDLDAVE 692
           +      FEIP   VS     KNE  LEFHQNDD+ V LMEMRFH+P   E   D D VE
Sbjct: 121 SWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVE 180

Query: 693 AFHQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
            F + V+  A + + +   I +  ++ C TPRGR
Sbjct: 181 EFKKAVLAYAGLEAETEQPICLLTDILCTTPRGR 214


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score =  151 bits (366), Expect = 6e-37
 Identities = 78/214 (36%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
 Frame = +3

Query: 156 MEFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWG 335
           M  L++  V  E  G++  G L +T+ +I F   K GK   I+  D++ + +QK     G
Sbjct: 1   MTELKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPG 60

Query: 336 LRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSF 515
           LR+ L +G  HR+GGF + + +K+  F  +N++K + +  L + GWN+G A   G  + F
Sbjct: 61  LRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEF 120

Query: 516 NVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTS-EVANDLDAVE 692
           +      FEIP   VS     KNE  LEFHQN+ + V LMEMRFH+P   E   D D VE
Sbjct: 121 SWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVE 180

Query: 693 AFHQQVMNKASVISVSGDAIAIFRELXCLTPRGR 794
            F + V+  A + + +   I +  ++ C TPRGR
Sbjct: 181 EFKKAVLAYAGLEAETEQPICLLTDILCTTPRGR 214


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 415 NFATFSCSPSLKPPYLCKVPFLRNKRKPHEPMNFWKFTSSMS 290
           + A   CSPS +  ++  +P +R  RKP  P++  KF+  +S
Sbjct: 304 SIALLFCSPSWRDAFIGGIPIIRRFRKP--PVSLRKFSQKVS 343


>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +3

Query: 297 ELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKG-- 470
           E ++  + + S  L LFLK      Y   K       ++       KD+  KE ++K   
Sbjct: 178 EHLHVNQKMSSRDLNLFLKRWMRGEYKSLKSLRCHVGSEASADEIFKDVKYKEENVKSVI 237

Query: 471 -WNWGTAKFNGAVLSFNVGTNTAFEIPLHYVS 563
            WNWG  K    +  F+ GT     +   YV+
Sbjct: 238 QWNWGFMKVKRVIYRFD-GTRATCVLKYGYVT 268


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 210 VPCFLLFLRKHRYTLKTPCFVI*QYFTTRCNNVKLAYISLRLNNS-FND*LVTVFXSV*R 34
           +P   +FL+      K P   I    +    ++ + YI L++NNS F+  ++ +F  +  
Sbjct: 120 LPVIYIFLKMSNSIFKLPVIYIFLKMSNSIFDLPVIYIFLKMNNSIFDLPVIYIFLKMSN 179

Query: 33  KTFHLXVFKFF 1
             F L V   F
Sbjct: 180 SIFDLPVIYIF 190


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 601 FIRMMTHLYH*WKCASTFPPVKWPMIWMQLKHS 699
           FI+  T   H  K  +TFPP+ +   W  LK S
Sbjct: 214 FIKFNTETDHIVKLFTTFPPINYFKFWHPLKPS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,769
Number of Sequences: 27780
Number of extensions: 398671
Number of successful extensions: 1012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)