Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F04
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 239 CDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQ 361
           C+  G  ++ + +  DG PI+ N+    +E    +   +YQ
Sbjct: 349 CNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRKEDKGMYQ 389


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 595 ISIPNAVGNFNNSIVICLVDTSTKAR 672
           + I N     +N+  I LVD STK R
Sbjct: 438 VQIENLKTTPDNTTFITLVDVSTKRR 463


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory
          receptor candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 4  TPSHKLSFTRSFVKTDTKSV 63
          TPS KLS  RSF+     +V
Sbjct: 33 TPSFKLSKIRSFLNITASAV 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,173
Number of Sequences: 336
Number of extensions: 3690
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)