Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F04
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     94   1e-19
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     93   2e-19
07_03_0989 + 23161020-23161412                                         52   5e-07
07_03_0990 + 23173868-23174200                                         51   1e-06
01_06_1364 + 36684937-36685281                                         50   3e-06
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308...    49   4e-06
07_03_0988 + 23160028-23160360                                         44   2e-04
01_04_0034 + 15318509-15319567                                         33   0.20 
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    28   9.8  

>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
 Frame = +2

Query: 122 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 286
           DEKK     G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + ++ + F FD
Sbjct: 8   DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67

Query: 287 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 376
           G+ +N   TP  LEME+GD I+    QTGG
Sbjct: 68  GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97


>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/82 (52%), Positives = 53/82 (64%)
 Frame = +2

Query: 131 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 310
           +G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + M  + F FDG+ +    
Sbjct: 15  EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74

Query: 311 TPTSLEMEEGDTIEVYQQQTGG 376
           TP  LEME+GD I+    QTGG
Sbjct: 75  TPDELEMEDGDEIDAMLHQTGG 96


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +2

Query: 143 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 316
           E++ LKV G D   V   + +   L+ LM+ Y DR+   +Q    RF FDG+ +    TP
Sbjct: 37  EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96

Query: 317 TSLEMEEGDTIEVYQQQTGGVS 382
             L+ME+GD +  +++  GG +
Sbjct: 97  AELQMEDGDEVNFFEELIGGAA 118


>07_03_0990 + 23173868-23174200
          Length = 110

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +2

Query: 131 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINE 304
           K   E++ LKV   D   V   ++    L+ LM+ Y DRA   +Q    RF +DG+ ++ 
Sbjct: 25  KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84

Query: 305 NDTPTSLEMEEGDTIEVYQQQTGGVS 382
             TP  L+ME+GD ++ +++  GG +
Sbjct: 85  WQTPAELDMEDGDEVDFFEELIGGAA 110


>01_06_1364 + 36684937-36685281
          Length = 114

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +2

Query: 107 NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-R 280
           +LK+   + G     I + V  Q  A V F IK    LR++M+ YC +  L  + V+F  
Sbjct: 17  DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76

Query: 281 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVSL 385
            DG+ +    TP  + +++G TI +   Q GG  +
Sbjct: 77  DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111


>01_05_0651 +
           23930455-23930457,23930543-23930636,23930764-23930849,
           23930930-23931108,23932275-23932482,23932808-23932975
          Length = 245

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +2

Query: 101 HINLKMADEKKGENEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 277
           HI+L  + E+    E + + V  QD A   QF++ K     KL  AY  +  LS+  + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214

Query: 278 RFDGQPINENDTPTSLEMEEGDTIEV 355
            FDG  ++   TP  L +E+ D +EV
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240


>07_03_0988 + 23160028-23160360
          Length = 110

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 149 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFRFDGQPINENDTPTSL 325
           I LKV+ Q++  ++  I+    L+ +M+ Y  +A  ++     F FDG  +  + TP  L
Sbjct: 21  ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80

Query: 326 EMEEGDTIEVYQQQTGG 376
           EM +GDT++ +    GG
Sbjct: 81  EMVDGDTVDFFPVMIGG 97


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 149 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFRFDGQPINENDTPTS 322
           + + +L    A   + +++   L+ LM+    R   SM        ++G+ + ++ TP  
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335

Query: 323 LEMEEGDTIEVYQQQTG 373
           L++E+GDTI    +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
 Frame = -2

Query: 704 AFALLLQX-YNSLAXVDVST-KHITMELLKLPTAFGILII----------YLTTSYLRRI 561
           AF LL+Q  Y+    VD+     + +ELL L   FGI  +          +L+ + L  I
Sbjct: 402 AFFLLIQFMYSGELKVDIEEITPVLVELLLLSDQFGITALQFECCKRIMEFLSKARLVHI 461

Query: 560 --MLCVARLCYYVSQNYFLTLLQIQMMFL 480
             M+C+  + Y +S+N  + L  + ++ L
Sbjct: 462 VKMICITHMSYLISENQIMILPTLVILVL 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,066
Number of Sequences: 37544
Number of extensions: 331882
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)