Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_F02
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.60 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.2  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   5.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.6  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   7.4  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   7.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.8  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = +1

Query: 274  FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 417
            F GLLS+    L+L   L+D   +Q  P   RR+F R+ + N   KK K  + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 320 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 463
           S S  +   +V+SS     + SS +P S+TP  +     SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +2

Query: 332 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 448
           +RC  A+S  SSESH +  ++++P S TPN T +  +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +2

Query: 332 NRCLVAVSSSESHQRTLSSRRP------NSTTPNGTGLDTRSPKMTSSTSMNKYIY 481
           NR    +S S    +TL    P      +   P  +G+D+ S K+ +S++ N+YI+
Sbjct: 401 NRLKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIH 456


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 52  KLLSPIVKNLTAIENFNSTLQL 117
           K++SP +KNL A   FNSTLQ+
Sbjct: 204 KVISPGLKNLGATCFFNSTLQV 225


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   AGRCARVLLSGCGIRCQALKSYREEPNGHRE 95
           A +  R +LS  G+  + + S  +EPN HR+
Sbjct: 327 ASKVCRTVLSMLGLFTEQVFSVADEPNNHRK 357


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = -1

Query: 630 KLTHYITYITRKYTVHT**N*LVTNTIWYHWYFKRVTPVPYYLSVVIGYIYIYLFIEVDD 451
           KL+HYI+ +T++  + +     + + +        VT +   +S  +GY Y+Y+ +  + 
Sbjct: 681 KLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSW-LGYTYLYIRMRRNP 739

Query: 450 VIFGL 436
           +++G+
Sbjct: 740 LVYGI 744


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 350 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 457
           +SSS ++  T SS   +++TP  T   T++  +TS+
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTST 205


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 353 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMN 469
           S+SES Q   S+R  NS TP  T   + +  +++S  ++
Sbjct: 177 STSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVS 215


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 341 LVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIY 481
           LVA    E  Q  +S   P     + T L + +P M ++  + K+IY
Sbjct: 364 LVAQLYEEMQQIPMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIY 410


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 344 VAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 460
           V+VS +     T +   P+S +PN  G    S  + SST
Sbjct: 8   VSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASST 46


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 549 WYHWYFKRVTPVPYYLSVVIGYIYIYLF 466
           W   YF    P+P +LSV + +   Y+F
Sbjct: 344 WNLKYFISALPLPCFLSVQLRWFITYIF 371


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 389 RRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYPITTD 502
           +RP S  P  TG  T +P+ T ++        +P T+D
Sbjct: 272 KRPASIAPQPTGASTIAPQPTGTSPSPPVEMNFPDTSD 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,371
Number of Sequences: 5004
Number of extensions: 58023
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)