Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E24
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.16 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   1.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.9  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    27   1.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.9  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   7.9  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   7.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 297 NFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 181
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 98  ALARASRXEDEKHEELHFEMSTSEHRRKD 12
           A ARA+R EDE  E+   E   ++ RRK+
Sbjct: 377 AAARAARLEDELEEQRERERELAKKRRKN 405


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 110 AXHLLXTARTSLILPKPTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 259
           A  L  ++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 KAYNPNGNGYEPIDNGAYYVDRPQGRP 234
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 183  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 290
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +1

Query: 160 YNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 261
           YN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 120 YNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +2

Query: 14  LFACAHSCSSQNAILHAFRPRLCWLWPTL----KXTAXHLLXTARTSLILPKPTT 166
           LF     C  +  I+H +  R+C L+P +    K  A   L      L LP+P+T
Sbjct: 199 LFTFEVVCPEKLEIIHPYYHRICTLFPQMNDWDKVVALKTL-VRYARLTLPEPST 252


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 92  PTLKXTAXHLLXTARTSLILPKPTTLMETATNLSTTVHITWTVPKADLTSSLPLS 256
           PT++ T   ++ T  T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 149 LPKPTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGS 277
           +P P    E   NLS     TW  P A +     L L+L++GS
Sbjct: 175 IPCPIFKAEDLFNLSVR---TWKNPSASVHDKALLYLILSIGS 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,989
Number of Sequences: 5004
Number of extensions: 28435
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)