Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E24
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       29   1.5  
08_02_1289 - 25923916-25924586,25925148-25926630                       27   5.9  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    27   5.9  
05_03_0637 - 16465433-16466242                                         27   7.8  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 118 PXXNRPYIVNPPKAYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 261
           P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 58  PAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>08_02_1289 - 25923916-25924586,25925148-25926630
          Length = 717

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 384 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 235
           ALQY+Y  +P+  +   H+K  NILL   F      YSL+P  +     +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 198 RCILRGPSPR-PTLLQAYPFPWCSRW 272
           + I+  PSP  P +  A  F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780


>05_03_0637 - 16465433-16466242
          Length = 269

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 152 PKPTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 268
           P P  L   AT  ++TV  T T P   L ++ P ++++A
Sbjct: 168 PPPPPLYYAATASTSTVTTTTTAPPPQLAAAAPAAVLVA 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,245
Number of Sequences: 37544
Number of extensions: 205460
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)