Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E23
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   0.83 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   4.4  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   5.9  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.8  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   7.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   7.8  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +1

Query: 484 LDIPKVKKQSLQHLK-SSVEEDF-QFLSELAA-LKAVTEKVE-SGAISADNIIDFYNLRI 651
           L+I K KK      K ++V  D  Q+  E    + ++ EK++ +   + +N  +F+NL+ 
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWNLKF 605

Query: 652 NSLHALRDFHG 684
           N L  LR FHG
Sbjct: 606 NLLTMLRSFHG 616


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 251 LNGSVINNPFHSEXXSTERPREAEXIAFKRRXKVLLEPEKLNDAGRW---RMLSAPEALR 81
           L G  ++NPF       +R  EAE I  +++   +   ++  +   W   RM+++  +  
Sbjct: 298 LLGDEVHNPFSDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKA 357

Query: 80  PMIEEMKKTQTETRV 36
           P +E       E RV
Sbjct: 358 PGLESDYSLMEERRV 372


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 831 ANSXARVDNVSCYSC 787
           +NS  R+DNV+CY C
Sbjct: 57  SNSEERLDNVTCYMC 71


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 199 SVEXXSEWNGLLITDPFNTPEAVVEVYISGISS-LGSSADFKSKKYPLVVDEYEPDTFDV 375
           S+   ++   L+ TD  +    ++ VY   IS  L  S     + YP V +    + F++
Sbjct: 440 SLYGSTDAEALVATDEQDILMILICVYCLSISEKLPFSISMLVEGYPAVANPEGVEVFEI 499

Query: 376 LKHRINQRFTN 408
           L     Q+FTN
Sbjct: 500 LDEMFFQQFTN 510


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 532 SVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHALRDFHGPNS 693
           SV++D  FLSE+ ALK + E + S +    +       ++  L AL + +G +S
Sbjct: 166 SVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDS 219


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 337 LVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLS 441
           L +DE +P T      RI  R +NGG  ++ +NLS
Sbjct: 330 LQIDENKPTT------RIQVRLSNGGRTVLTVNLS 358


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 343 VDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQ 519
           V E+ + ++FD      ++ F    N  +N   S  + LLSY+ VLG      ++   L 
Sbjct: 364 VSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILD 419

Query: 520 HLKSSVEEDFQFLSELAA 573
            +K   + D Q  SEL +
Sbjct: 420 RVKKGYQFDSQKNSELVS 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,482
Number of Sequences: 5004
Number of extensions: 56924
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)