Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_E23
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 30 2.0
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 3.5
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 29 3.5
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 4.7
10_01_0201 + 2175660-2176892 29 6.2
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 8.2
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 8.2
06_03_0707 + 23744103-23744280,23744460-23745499,23745728-23745739 28 8.2
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 28 8.2
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 30.3 bits (65), Expect = 2.0
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Frame = +1
Query: 91 SGALSILHRPASLSFSGSSKTFXRLL---KAXFSASLGLSVEXXSEWNGLLITDPFNTPE 261
SG IL L+ G+ F RLL K F S LS+E EW GL+ F T
Sbjct: 294 SGTKEILQTGQGLADHGNYHEFCRLLGRFKVNFQLSELLSIEFYGEWIGLVA--EFTTKS 351
Query: 262 ------AVVEVY--ISGISSLGSSADFKSKKYPLVVDEYEPD-TFDVLKHRINQRFTNGG 414
A VY +S S L +S + P ++DE P T + RIN +
Sbjct: 352 LLSWQWASNSVYYLLSLWSRLVTSVPYLKSDTPSMLDETVPKITEGFITSRINSVQASFA 411
Query: 415 NKLVNINLSDSDQL 456
N + L + D L
Sbjct: 412 NDSSDDTLDNVDVL 425
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 88 ASGALSILH-RPASLSFSGSSKTFXRLLKAXFSASLGLSVEXXSEWNGLLITDPFNTPEA 264
A G+L +++ RP SLS + S +F LL +SL L+T P + P +
Sbjct: 4 APGSLPLVNSRPVSLSLAASRSSFSSLLSGGAGSSLN------------LMTPPSSLPPS 51
Query: 265 VVEVYISGISSLG 303
Y G+SS G
Sbjct: 52 SPSSYFGGVSSSG 64
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 91 SGALSILHRPASLSFSGSSKTFXRLL---KAXFSASLGLSVEXXSEWNGLL 234
SG IL L+ G+ F RLL K F S LS+E EW GL+
Sbjct: 346 SGTKEILQTGQGLADHGNYHEFCRLLGRFKVNFQLSELLSIEFYGEWIGLV 396
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 313 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 411
DF YP+ EY P FDV H +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342
>10_01_0201 + 2175660-2176892
Length = 410
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 12 FLSRTNGCNSGLCLGFLHLFNHRSQCLWRTQHPP 113
FL R + + LG LHL +H S+C + PP
Sbjct: 56 FLRRVHALHPRPLLGLLHLEHHGSRCRFLPAEPP 89
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +1
Query: 223 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 402
N +L PF TP+ + ++ + + G SAD PL D+ +P + ++ QR
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307
Query: 403 TNGGNKLVNINLSDSDQLLSYSNVLGDL 486
+ +N L D D + + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 137 EKLNDAGRWRMLSAPEALRPMIEEMKKTQTETRVAAIC 24
E++ A RW SA A P +K+++ E ++ ++C
Sbjct: 39 EEIRAAERWFEASASHAPSPFAPRIKESRAEVKIESLC 76
>06_03_0707 + 23744103-23744280,23744460-23745499,23745728-23745739
Length = 409
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 60 LHLFNHRSQCLWRTQHPPSSCVVK 131
+ LF S+ ++ T +PPS+CV K
Sbjct: 197 IELFTPHSEAVFATSYPPSACVFK 220
>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
Length = 155
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 30 GCNSGLCLGFLHLFNHRSQC-LWRTQHP 110
GC G C G +H H++ C WR+ P
Sbjct: 25 GCGYGRCSGEIHTAAHQAHCGRWRSSGP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,879,697
Number of Sequences: 37544
Number of extensions: 335540
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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