Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_E21
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0669 + 10295160-10295356,10296003-10296045 39 0.003
07_03_1432 - 26508135-26508881,26509301-26509708 29 3.4
12_01_0877 - 8415186-8415272,8415696-8416310 29 4.5
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 29 4.5
05_01_0206 + 1487034-1489430 29 4.5
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 29 4.5
02_05_0763 + 31583449-31583747,31584095-31584230,31584544-315845... 28 6.0
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 6.0
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 7.9
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 28 7.9
>03_02_0669 + 10295160-10295356,10296003-10296045
Length = 79
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 180 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLE 326
+ S L A S H+ C N ++ C++++ +P+KC+ +G+ V C +
Sbjct: 17 TSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRCVFD 65
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 540 PEPKAVY--PDATPALPEDAEKKPPRLGSRFYWMTEXC 647
P P Y P TP P A PP LG R + + C
Sbjct: 63 PSPPTTYLPPSPTPPSPAPASPSPPSLGLRVGYYSSSC 100
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 471 LPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKP 605
LPR EA + + PKP P+ P+ P LP E P
Sbjct: 142 LPRTEITDDIEATLPKKEEPKPPSPPREAEPEPEPPLPPPEEPTP 186
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 552 AVYPDA--TPALPEDAEKKPPRLGSRFYWM 635
A YP A +PAL DA KPP +G R +++
Sbjct: 363 AAYPAAAASPALAFDASSKPPLIGGRPFFL 392
>05_01_0206 + 1487034-1489430
Length = 798
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +3
Query: 474 PRPGFGYFCEA-------RVHDTKRPKPLPEPKAVYPDATPA 578
P P G FC+ R DT P P P P+ P ATP+
Sbjct: 310 PLPDSGRFCKVSGDVICRRFCDTSPPPPPPSPRTPSPPATPS 351
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 510 VHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRL 614
V P PLP P V P P P + PP+L
Sbjct: 312 VKSVTAPSPLPVPVHVVPVPVPVQPVQVQLPPPQL 346
>02_05_0763 +
31583449-31583747,31584095-31584230,31584544-31584593,
31585586-31585852,31586481-31586708,31586873-31587011,
31587091-31587161,31587313-31587412,31588201-31588264,
31588346-31588417,31588500-31588720
Length = 548
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 288 INEGKAVTACTLEFFKKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKT 431
++ G + T+ L+ +K + EF++ N SS DY+F +C T
Sbjct: 353 VDTGTSFTSLPLDAYKSITM----EFDKQINASRASSDDYSFEYCYST 396
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 525 RPKPLPEPKAVYPDATPALPEDAEK---KPPRLGSR 623
+PKP P+PK P P P+ K KPP+ G +
Sbjct: 171 KPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPK 206
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 525 RPKPLPEPKAVYPDATPALPEDAEK-KPPRLGSR 623
+PKP P P P P P+ K KPP+ G +
Sbjct: 162 KPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPK 195
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 219 KYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFKKVKKTCLAEFNQYSNCLDKS 395
K C+T+ ++Y C +PR C A C + ++ K C + S CL ++
Sbjct: 92 KKCKTLIDKYEECSNPPKEPRLCPAHELAFEKCLQKNVGEI-KVCQFWMDMMSKCLRRN 149
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 525 RPKPLPEPKAVYPDAT 572
+P+P PEPKA Y +AT
Sbjct: 395 KPEPEPEPKAAYDEAT 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,548,773
Number of Sequences: 37544
Number of extensions: 360911
Number of successful extensions: 1327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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