Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E19
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    79   6e-16
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    77   2e-15
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    73   2e-14
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   1.6  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.3  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 78.6 bits (185), Expect = 6e-16
 Identities = 33/61 (54%), Positives = 50/61 (81%)
 Frame = +3

Query: 93  LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
           L  +GG   P+A+D+E +LS+VGIEA++E ++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 273 G 275
           G
Sbjct: 69  G 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 34/61 (55%), Positives = 50/61 (81%)
 Frame = +3

Query: 93  LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
           L  +GG   P+A+D+E +LS+VGIEA+AE ++ +I+ELNGK++E+LIAAG EKLS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 273 G 275
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 31/61 (50%), Positives = 50/61 (81%)
 Frame = +3

Query: 93  LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
           L  +GG   P+A+D+E +LS+VGIE+++E ++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 273 G 275
           G
Sbjct: 69  G 69


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +3

Query: 48  CQXGLKKCVTWPRLYLAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQ 227
           C   L+K V   R    V+   PP + ++ EQ+L SV   +D      +IT  N + V++
Sbjct: 724 CSESLEKRVK-SRFSHMVIPMRPPSSLSEFEQILKSVLYVSDEGGKDQIITCWNQR-VDE 781

Query: 228 LIAAGREKLSSM 263
           L++  R  L  +
Sbjct: 782 LLSDTRSHLHKL 793


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 403 TKLYKSTRRWSLFQFMF 453
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 135  VEQLLSSVGIEADAEXLKXVITELNG 212
            V+++   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,093
Number of Sequences: 5004
Number of extensions: 16771
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)