Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_E19
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 80 2e-15
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 70 2e-12
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 65 3e-11
07_01_1001 - 8460467-8460799 49 2e-06
07_03_0321 + 16757414-16757743 47 1e-05
01_06_0098 - 26416768-26416998 34 0.098
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 28 4.9
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 28 6.5
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/62 (56%), Positives = 50/62 (80%)
Frame = +3
Query: 93 LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
LAVLGGN P+A D++ +L SVG+EA+ E L+ +++EL GKD+ ++IAAGREK +S+P G
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSG 68
Query: 273 GG 278
GG
Sbjct: 69 GG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +3
Query: 93 LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
LA L GNP P+A D+ +L SVG E D ++ ++++L GKD+ ++IA+GREK +S+P G
Sbjct: 202 LATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCG 261
Query: 273 GG 278
GG
Sbjct: 262 GG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +3
Query: 93 LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
+A L GN P A D+ +L SVG E D ++ ++++++GKD+ +LIA GREK +S+P G
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSG 68
Query: 273 GG 278
GG
Sbjct: 69 GG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 93 LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSMPVG 272
+A +GGN P DV +L +VG + D + L + ++ GKD+ +++AAG E L+ VG
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 93 LAVLGGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLS 257
+A +GGN P DV +L +VG + D + L + ++ GKD+ +++AAG E L+
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 114 PPPAAADVEQLLSSVGIEADAEXLKXVITELNGKD 218
PPP V +++ +V IEAD+ K ++ L GKD
Sbjct: 14 PPPPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 15 DAVILSAXHVSCQXGLKKCVTWPRLY-LAVLGGNPPPA---AADVEQLLSSVGIEADAEX 182
D + SA S + + W R + +A+L +P PA A + QL SVG E A
Sbjct: 1140 DVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAG 1199
Query: 183 LKXVITELNGKDVEQLIAAGREKLSSMPV 269
++N EQL+ + + SS +
Sbjct: 1200 FASCWAQMNETSQEQLVRSLKTAFSSQNI 1228
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 105 GGNPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLI 233
GG A AD ++L + G+ D E L+ + L+G+D E +I
Sbjct: 158 GGTSGEADADGDELGAGAGLMGDDEALRSMQACLDGEDSELVI 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,935
Number of Sequences: 37544
Number of extensions: 146255
Number of successful extensions: 392
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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