Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E11
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   0.82 
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    26   2.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   3.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   7.7  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 159 N*IWKCFISMSNMKKKFFLTYL 94
           N  WKC++ + ++KK +FL  L
Sbjct: 160 NETWKCYLHIQDVKKSYFLASL 181


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 267 NMDLTIYFDRLIKFIQHKTSNW 202
           ++D  + F+RL+  IQ+KTSN+
Sbjct: 242 HVDTGMGFERLVSVIQNKTSNY 263


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 144 CFISMSNMKKKFFLTYLFHVSILMIKF 64
           CF+S+   + ++F+TY+FH    MI F
Sbjct: 357 CFLSV---QLRWFITYIFHPPAAMILF 380


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 267 NMDLTIYFDRLIKFIQHKTS 208
           NMDLTI F     F+ H  S
Sbjct: 253 NMDLTIQFQEADSFLSHSES 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,106,269
Number of Sequences: 5004
Number of extensions: 18612
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)