Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_E05
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 69 7e-13
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 36 0.006
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.8
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 27 2.8
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 5.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 25 8.7
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 68.9 bits (161), Expect = 7e-13
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
Frame = +3
Query: 201 IASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHE-EINSIYKLN--KSHISLLEEF- 368
I S + ++I + VV+++D +PK+K+H L++ + + ++ L H SL+E+
Sbjct: 42 IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLV 101
Query: 369 --------GNIFKELKE------ENES---ELRAGFHAIPSMQRMHMHVISTDMISTSLK 497
G IF E + NE+ ++ GFHA PSM +H+H+++ D +S SLK
Sbjct: 102 SYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLK 161
Query: 498 TKIHWNSFCTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKTPLQCNQC 647
H+ SF + FF+ D L G + TSL + L+C +C
Sbjct: 162 NSAHYISFTSPFFVKIDTPTSNLPTRGTL--------TSLFQEDLKCWRC 203
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 264 DKYPKAKVHYLVLPHE-EINSIYKLNKSHISLLEEFGN-IFKELKEE---NESELRAGFH 428
D+ + ++ + + H +I SI L HI LLE N + E+ ++ ++++L+ H
Sbjct: 176 DRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVH 235
Query: 429 AIPSMQRMHMHVISTD 476
+PS +H+H++ D
Sbjct: 236 YLPSYYHLHVHILHVD 251
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 288 HYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 413
++++ PH + + K+ + H +L +F +F+ L ENE +
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESV 449
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 309 EEINSIYKLNKSHISLLEEFGNIFKEL 389
EE+ S++ ++KS S +FGN+F L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 172 FEGIAGSSIFSLTHNWCTFTNICMNVEFQQLH 77
F GIAG ++ +L WCT+ M V Q++
Sbjct: 171 FNGIAGYALAALACIWCTYAASAMFVGILQVN 202
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +3
Query: 288 HYLVLPH--EEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMH 461
H+L+ H EI +Y L S ++ ++ S ++ H I + +
Sbjct: 317 HFLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSRDKYKL 376
Query: 462 VISTDMISTSLKTKIHWNSFCTKFFIPYDELLQEL 566
IST+ I + +++ W F K + Y L+QE+
Sbjct: 377 PISTEEIKPVVYSQVTWTEF-EKKLLRY--LVQEM 408
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 306 HEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 413
H+ +N++ + K + LEE G+ KEL EE++ +
Sbjct: 545 HKALNTLDEETKHQV--LEEIGDYVKELDEESKKAI 578
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 492 LKTKIHWNSFCTKFFIPYDELLQELKDIGNIRKIP 596
L+T IH +FC FF + KD+ RK P
Sbjct: 3 LETLIHGVTFCVPFFSKSARIHTLSKDVFQQRKFP 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,953
Number of Sequences: 5004
Number of extensions: 50206
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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