Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_E04
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   115   5e-28
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  115 bits (276), Expect = 5e-28
 Identities = 57/139 (41%), Positives = 81/139 (58%)
 Frame = +2

Query: 326 IGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSP 505
           IGEP    H++   D SYDFI+VGGG+A  V+A RL+EV+NW VL++EAG D P+ A  P
Sbjct: 52  IGEPCQRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIP 111

Query: 506 GYSLITSTLLPNWGYFGVNDDFSSQGQKFKSIRHTRGKMLGGSSSLNSMFYVRGNRADYD 685
               +      +W Y+  N+  +       S    RGK LGG++  + M Y RG+R DY+
Sbjct: 112 SNLQLYLGGDLDWKYYTTNESHACLSTG-GSCYWPRGKNLGGTTLHHGMAYHRGHRKDYE 170

Query: 686 NWAENGNEGWDWNTVIXYF 742
            W + G  GW W+ V+ Y+
Sbjct: 171 RWVQQGAFGWSWDEVMPYY 189


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +2

Query: 167 KFDWASATVLKGAKTFECVLIMFFQAIALF 256
           ++ W   +VL G   F C+ +++   + +F
Sbjct: 387 QYTWRHTSVLIGWSAFLCISLVYIIMLIIF 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,129
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)