Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D23
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 117 1e-27
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 57 2e-09
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 54 3e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 53 4e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 53 5e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 52 6e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 49 8e-07
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 44 2e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 5e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 39 6e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 8e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.003
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.010
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 34 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.054
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.071
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.071
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.094
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.12
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.22
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.22
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.22
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.29
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.66
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.88
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.88
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.2
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 8.2
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 117 bits (282), Expect = 1e-27
Identities = 61/125 (48%), Positives = 78/125 (62%)
Frame = +2
Query: 341 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 520
+K RV EME EA KL+ MQ ++D + T L +K D +SVYVGNVDY
Sbjct: 17 MKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVGNVDY 64
Query: 521 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFXGRQ 700
T EEL+ HF CGS+NRVTILC+K+ GHPKGFAYIEF + V A+ ++ S+ R
Sbjct: 65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERP 124
Query: 701 IKVMP 715
+KV P
Sbjct: 125 LKVTP 129
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +2
Query: 470 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 649
+++ + +V+VGN+ + AT ++L F GCG I + + + G KGF Y+ F D D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 650 SVQTAMAMDESLFXGRQIKV 709
S + + M+ GR ++
Sbjct: 419 SAKKCVEMNGHFIAGRPCRL 438
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/88 (20%), Positives = 40/88 (45%)
Frame = +2
Query: 407 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 586
D++ P P ++ + + +V+VG + + + L Q F G+I +
Sbjct: 235 DEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARV 294
Query: 587 LCNKYDGHPKGFAYIEFGDKDSVQTAMA 670
+ + G KG+ Y++F ++ + A+A
Sbjct: 295 IMDGQSGRSKGYGYVDFETPEAAKAAVA 322
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.6 bits (123), Expect = 3e-08
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 491 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 670
R V+VGN+ + A E L ++F CGSI+ V I+ + KGFAYI+F D V A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 671 MDE-SLFXGRQIKVM 712
++E + GR +++M
Sbjct: 330 LNEKKMPEGRTLRIM 344
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +2
Query: 428 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 607
S P T SI+ + + ++VGN+D+ T +L++HF G I RV ++ + G
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTG 266
Query: 608 HPKGFAYIEFGDKDSVQTAMAM 673
KGF +++F D D+ AM +
Sbjct: 267 KCKGFGFVDFPDIDTCMKAMEL 288
Score = 32.3 bits (70), Expect = 0.071
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 614 KGFAYIEFGDKDSVQTAMAMDESLFXGRQIKV 709
KGFAY++F +D+++ A+ E GR I +
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILI 196
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 52.8 bits (121), Expect = 5e-08
Identities = 36/118 (30%), Positives = 56/118 (47%)
Frame = +2
Query: 356 REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 535
R + + E L+ +++ S P +S L+ EE E D R+V+V + T+
Sbjct: 200 RAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLS---EE--ERDRRTVFVSQLANRLTSR 254
Query: 536 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFXGRQIKV 709
EL F G + I+ +K G KG AY+EF +DSVQ A+A+ G + V
Sbjct: 255 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIV 312
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 52.4 bits (120), Expect = 6e-08
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 455 NMSIEEK---IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFA 625
N+S +E+ + ++ + +++ N+ Y ++L+ F G + +V + +K +PKGFA
Sbjct: 308 NVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
Query: 626 YIEFGD-KDSVQTAMAMDESLFXGRQIKVMP 715
YI+F D D+V+ + +D F GR + V+P
Sbjct: 368 YIDFHDADDAVRAYLELDAKPFQGRLLHVLP 398
Score = 33.1 bits (72), Expect = 0.041
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +2
Query: 470 EKIEA-DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP-----KGFAYI 631
E IE+ D ++YV N+++ EE ++ F I P GF ++
Sbjct: 611 EDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFV 670
Query: 632 EFGDKDSVQTAM-AMDESLFXGRQIKV 709
EF DK S AM AM+ + G ++++
Sbjct: 671 EFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +2
Query: 428 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 607
S G+ + + ++ + + + N+ + AT ++++ G + V + K+D
Sbjct: 700 SHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDR 758
Query: 608 HPKGFAYIEFGDKDSVQTAM-AMDESLFXGRQI 703
+GFA+ EF AM A+ + GR +
Sbjct: 759 SARGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 503 VGNVDYGATAEELEQHFHGCGSINRVTI 586
V N YG +AEEL F G + R+ I
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 48.8 bits (111), Expect = 8e-07
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Frame = +2
Query: 365 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 538
+E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E
Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107
Query: 539 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF--GDKDSVQTAMAMDESLFXGRQIKV 709
L+ HF G + V I +K G KG+A++EF D + A+ +++ R+I +
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +2
Query: 461 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 640
+I + + ++VG V T EE F+ G + T++ +K G P+GF ++ +
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 641 DKDSVQTAMAMDESLFXGRQIKV 709
++ +V+ M+ G+ ++V
Sbjct: 297 NESAVEATMSQPYITIHGKPVEV 319
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/106 (17%), Positives = 44/106 (41%)
Frame = +2
Query: 368 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 547
E+ E K ++ GS ++ N ++ +++G +++ T + L
Sbjct: 122 EDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 548 HFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESL 685
+F G + T++ + G +GF ++ F + V M+ + L
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHL 227
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE-FGDKDSVQTAMAM 673
VYVGN+ + T E++ F CG I R+ + +++ P GF ++E F ++D++ + +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 674 DESLFXGRQIK 706
+ R I+
Sbjct: 94 SRTSLDERIIR 104
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 5e-04
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 470 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 649
+K R VYVGN+ Y EL++ G++ IL N +G KG A IE+ +
Sbjct: 59 QKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAE 117
Query: 650 SVQTAM-AMDESLFXGRQIKV 709
+TA+ + F GR + +
Sbjct: 118 EARTAIKTLSNQKFMGRLVYI 138
Score = 31.9 bits (69), Expect = 0.094
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMAM 673
+YVGN+ + + L F GS+ R I + G KGF ++F + D+ + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 674 DESLFXGRQIKV 709
+ + GR +++
Sbjct: 341 NGYRYGGRPLQL 352
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 673
V+VGN+ Y + +++ + F+ G + ++ + G KG+ + EF D ++ A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 674 DESLFXGRQIKV 709
+ S R+I+V
Sbjct: 69 NNSELGPRKIRV 80
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/81 (23%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 470 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 649
E ++A+ +VY+ N+D T +E F G I ++++ ++ D P+GF ++ + + +
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHE 312
Query: 650 SVQTAM-AMDESLFXGRQIKV 709
Q A+ +++ + G+++ V
Sbjct: 313 CAQKAVDELNDKEYKGKKLYV 333
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 485 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 649
D+ ++ V N+ EEL F G I RV + +K G KGFA++ + D+D
Sbjct: 200 DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/65 (27%), Positives = 38/65 (58%)
Frame = +2
Query: 482 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 661
+D+ +Y+GN+D+ +++ F G + ++ +K G KGFA++++ D+ S T
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS--T 85
Query: 662 AMAMD 676
+A+D
Sbjct: 86 VLAVD 90
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 667
VYVGN+ Y E++ F G + ++ + G PKG+ + E+ D + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +2
Query: 494 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 673
+ +VGN+ + T +L F G G + + ++ + +GF Y+EF D++ A+A+
Sbjct: 95 TAHVGNLSFDLTENDLGDFF-GEG-VTSIRLVIDPLTERSRGFGYVEFETADTLSAALAL 152
Query: 674 DESLFXGRQIKV 709
GR +++
Sbjct: 153 SGEDLMGRPVRI 164
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/84 (22%), Positives = 41/84 (48%)
Frame = +2
Query: 443 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 622
TS S +E + ++++G ++ T ++Q ++ G +V ++ N+Y G G+
Sbjct: 78 TSNYGSSRDENVY-QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 623 AYIEFGDKDSVQTAMAMDESLFXG 694
++EF +AM+M+ G
Sbjct: 137 CFVEFASPHEASSAMSMNNKPIPG 160
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/91 (21%), Positives = 40/91 (43%)
Frame = +2
Query: 440 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG 619
++ PL + + R +YV N+D+ +++E F G + V I +++ H KG
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI-PKRFNQH-KG 797
Query: 620 FAYIEFGDKDSVQTAMAMDESLFXGRQIKVM 712
F Y+ + A++ R + V+
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVLNVV 828
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 664
V+V N+ T+E+L HF G + + + N Y G G I F + S+ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.010
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +2
Query: 494 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD-----GHPKGFAYIEFGDKDSVQ 658
S+YVGN+ + +L + F G+ ++ +L K + P FA+I F +K S
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 659 TAMA-MDESLFXGRQIKV 709
A+A ++ S F G +KV
Sbjct: 81 NAIASLNGSSFQGNTLKV 98
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 34.3 bits (75), Expect = 0.018
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +2
Query: 488 NRSVYVGNVDYGATAEELEQHFHGCG----SINRVTILCNKY---DGHPKGFAYIEFGDK 646
N++VY+ + T +E+E+ F CG +I+ T Y DG PKG A I F
Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRS 168
Query: 647 DSVQTA 664
+SV+ A
Sbjct: 169 ESVELA 174
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.054
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 458 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRV 580
+S+ + E ++ ++YVGN+D + EE+ +HF G + +
Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 485 DNRSVYVGNVDYGATA--EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 658
D ++YV N+D +LE F GSI + C G KG+ ++ F ++
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAV 439
Query: 659 TAMAMDESLFXGRQ 700
A + G++
Sbjct: 440 RAKDTLNGMMVGKK 453
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.071
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 107 QVIQFITTNRTVFKLQSVFELHKITI*SKIFT 12
+V F T TVFK++ VF LH++ + S IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.071
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +2
Query: 491 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD--GHPKGFAYIEF-GDKDSVQT 661
+ +YVG + + +LE F GS++ + I+ NK G + FAY+ F D+D Q
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNFRTDEDKWQK 63
Query: 662 AMA-MDESLFXGRQIKV 709
+ + + F G ++++
Sbjct: 64 CKSYLSNATFKGSKLRI 80
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.094
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 667
+ V V AT E++E F G + + + ++ G+ KG+A IE+ + Q A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 479 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH----PKGFAYIEFGDK 646
+AD+ V+VG + E+ F G++ +VTI + P G A++ F ++
Sbjct: 40 QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQ 99
Query: 647 DSVQTAM 667
+ V A+
Sbjct: 100 EDVDKAI 106
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 30.7 bits (66), Expect = 0.22
Identities = 26/87 (29%), Positives = 41/87 (47%)
Frame = +2
Query: 419 SMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 598
S S +S L+ S EE + R++ V N+ T E + + F G I+ + + K
Sbjct: 79 SFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYK 134
Query: 599 YDGHPKGFAYIEFGDKDSVQTAMAMDE 679
KG+ YIE+ D Q A A+D+
Sbjct: 135 KSELNKGYCYIEYVYHD--QAANAVDK 159
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 422 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 601
MG PP SP+ + + I NR+VY+GN+ T EE+ G G ++ + L K+
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKH 358
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 488 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 598
+R++Y+GN D T E L++ F G I V K
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREK 449
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 676
++VGN+ E L Q F S+ + ++ ++ +G +GF ++ F D D A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 677 ESLFXG-RQIKV 709
+ G R +K+
Sbjct: 91 NGKYIGSRPVKL 102
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 446 SPLNMSIEEKIE--ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 598
SPL SI+ A +R+V++GN+ +E+E+ F G I + IL K
Sbjct: 282 SPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 443 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 607
+ PL +E+ I +R+VY ++ T EELE G I + L N+ G
Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSG 538
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 458 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 637
MSI E D ++Y+GN+D T L + G + + I ++ GF + EF
Sbjct: 1 MSIREDRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Query: 638 GDKDSVQTA-MAMDESLFXGRQIKV 709
+ V+ A +++ G+ I+V
Sbjct: 60 LHEQDVEYACQILNQVKLFGKPIRV 84
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 494 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 673
+++VGN+D L F G + + + +G KG+ ++ + DS +TA A
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY---DSFETADAA 156
Query: 674 DESL 685
E++
Sbjct: 157 IEAM 160
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +2
Query: 497 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 670
+Y+ N+ +++ + G + ++ N DG KGF + EF + + A++
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.88
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 362 MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 499
ME+ + K+ +TEV ++ S GL LN+ + ADN V
Sbjct: 65 MEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 275 YSLSR*FLPNDCCQSSLKNHHFLPFP 198
Y R ++P D + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 DFIVDLVTVSEK*SDLEIYNS*FRRSVEMAENDDFLDSI----DNNHLEGTNGSMNMTDN 286
DF + + + D+++ S +++ + + DDF + D++ LEG NG M +T
Sbjct: 398 DFSAYIASSESEDEDVDVIRSRYQKLLS-GDADDFQANSNPFEDDDKLEGANGEMEVTFT 456
Query: 287 SXXXXXXXXXXXXXXXXXIKARVREMEEEAEKLKQMQ 397
S I+ R+ E ++ K+++
Sbjct: 457 SGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 344 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 523
K + RE ++E EKL++ Q + K+ S G +S ++ ++ A+N S G G
Sbjct: 181 KEKERE-KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAG 239
Query: 524 A 526
+
Sbjct: 240 S 240
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 377 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 547
EK+K+++ E +QMS+ S L S L ++ E I + S+ + N +L+Q
Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 353 VREMEEEAEKLKQMQTEVDKQMSMGSPP 436
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,879
Number of Sequences: 5004
Number of extensions: 51894
Number of successful extensions: 195
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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