Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D21
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   5.9  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = +3

Query: 432 RESILNKLLSAIPSLVE--TKQYIGVLICGLTLWGTSWFLFKD--AVLPGSYIFNMSGVV 599
           RE +L  LL+  P LV   T Q +   +  L   G   +   D   ++ G+    +  V 
Sbjct: 368 REFVLRPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKKIINGALTMGILNVT 427

Query: 600 IAGYCFGHALERFTTINPVVGMTFMGALYRNLGPTNFLENSTANSIDFHLRRIYPVIILT 779
              +  G  + +   +     M   GA   ++G  +    +   S++  LRR+ P+I L 
Sbjct: 428 PDSFSDGGKVSQNNILEKAKSMVGDGASILDIGGQSTKPGADPVSVEEELRRVIPMISLL 487

Query: 780 K 782
           +
Sbjct: 488 R 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,493
Number of Sequences: 5004
Number of extensions: 69157
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)