Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D21
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834...    32   0.51 
05_06_0167 - 26104527-26104567,26105130-26105226,26105377-261054...    29   4.7  
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    28   8.3  

>05_04_0098 +
           17982196-17982355,17982761-17982978,17983232-17983418,
           17983957-17984057,17984708-17984885,17984956-17985233
          Length = 373

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 207 SFYSDGDVSNVSPKPFDHFKRPXNNKYITIQHMRT 103
           + + D +   +SP P DH +R   N  I +QH+RT
Sbjct: 240 NLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRT 274


>05_06_0167 -
           26104527-26104567,26105130-26105226,26105377-26105415,
           26105628-26105678,26105978-26106059,26106222-26106282,
           26106380-26106509,26106630-26106758,26107057-26107314
          Length = 295

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 656 SWNDIYGSSLQKPGTDEFS*KF 721
           SW DI+GS  +  G DEF  KF
Sbjct: 268 SWTDIWGSPTRYQGNDEFRGKF 289


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 573 YIFNMSGVVIAGYCFGHALERFTTINPVVGMTFMGALYRNLGPTNFLEN 719
           Y  ++  V    Y FGH+L++   ++P V   F   L+++  P+    N
Sbjct: 745 YAVDIDNVKAKFYSFGHSLKKNCIVSPYVISVFCRVLFQDSHPSKSKRN 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,475,421
Number of Sequences: 37544
Number of extensions: 390476
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)